Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011135.1 Corchorus capsularis cultivar CVL-1 contig11156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29819
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:9 original size:2 final size:2
Alignment explanation
Indices: 3--27 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1 GA
3 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
28 CTTTTGTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6732 original size:16 final size:16
Alignment explanation
Indices: 6713--6744 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6703 TTGAGAAGTC
*
6713 GACCTATTACCTATAT
1 GACCTATCACCTATAT
6729 GACCTATCACCTATAT
1 GACCTATCACCTATAT
6745 ATGAGTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (16 bp):
GACCTATCACCTATAT
Found at i:8561 original size:5 final size:5
Alignment explanation
Indices: 8551--8578 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8541 TTTTAAAGTT
8551 ATTAA ATTAA ATTAA ATTAA ATTAA ATT
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATT
8579 TTATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
ATTAA
Found at i:10107 original size:23 final size:23
Alignment explanation
Indices: 10081--10129 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
10071 CATCTATGAA
10081 CAAGAAGATTTATGTGGTTCGAT
1 CAAGAAGATTTATGTGGTTCGAT
10104 CAAGAAGATTTATGTGGTTCGAT
1 CAAGAAGATTTATGTGGTTCGAT
10127 CAA
1 CAA
10130 TTTCATCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (23 bp):
CAAGAAGATTTATGTGGTTCGAT
Found at i:10116 original size:62 final size:62
Alignment explanation
Indices: 10042--10168 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
10032 CAAACAAGAA
*
10042 CAAGAAGATTTATGTGGTTCGATCAATTTCATCTATGAACAAGAAGATTTATGTGGTTCGAT
1 CAAGAAGATTTATGTGGTTCGATCAATTTCATCTATGAACAAGAAGATTTACGTGGTTCGAT
10104 CAAGAAGATTTATGTGGTTCGATCAATTTCATCTATGAACAAGAAGATTTACGTGGTTCGAT
1 CAAGAAGATTTATGTGGTTCGATCAATTTCATCTATGAACAAGAAGATTTACGTGGTTCGAT
10166 CAA
1 CAA
10169 TTTGATCTAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (62 bp):
CAAGAAGATTTATGTGGTTCGATCAATTTCATCTATGAACAAGAAGATTTACGTGGTTCGAT
Found at i:13588 original size:662 final size:650
Alignment explanation
Indices: 12306--14497 Score: 1764
Period size: 662 Copynumber: 3.3 Consensus size: 650
12296 ATATATATAT
* * * * * ** * **
12306 ATATATAATTCAACACAAGAAAATATTGGAGGAC-TTTTCACGTTTTTAATATCGTTTTTCATAT
1 ATATATAATTCAACGCCA-AAAAGATTGAAAGACTTTTTCACACTTCTAATATCGAATTTCATAT
* * * * *
12370 TTTTGCTGAATTAATTTCTAATTAAATCCAAACAAGATTCAGATGATGCACGTAAAAACAAATCC
65 TTTT-TTAAATTAATTTCTAATTAAATCAAAACAAGATTCAGAT-A--CTCGTAAAAACAAATAC
** * * * * * * * * **
12435 TTAAATCCCATGTAGCTAAGATTTGATTAGATAAATAAAGATATTTAAAGGAATCTCGGTGCCAA
126 TTCGATGCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAA
* * * * ** * * * * *
12500 AAATCATGCAAAAC-AGAGTCGTGACCCCGAAACACGTTTTTAGCCAAAAACCGTAATAGTTAGT
191 AAATCATACAAAACTA-AGCCGGGGCCAAGAAACGCGCTTTTACCCAAAAACCGTGAT-GGT--T
* * * * * *
12564 ATATGATTTCGACTAAATTTTTGCAAAAATTGAGCCGAACGATA-TTTCCTCAATTTTTGGCTAA
252 ACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAA--ATATTTTTCTCAATTTTTGGCTAA
** *** * *
12628 AATACTCATTAAAAAATATATAATTTGACATGAAAAAGATTGAAGGGCTTTTAACGCTTCAAATA
315 AATACTCA-TAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
*
12693 TTGTTTTTCCTATTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAA
379 TCG---TT--TATTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAA
* * * ** * *
12758 AAAAAAATCTTTAAATCCAATGTGGCTAAGATTTGGTTTAGATGAATTTAAACATTTCAAGGAGT
439 AAACAAATCCTTAAATCCAATGTGGCTAAGATTTGG-TTAGATGAATATGGATATTTCAAAGAGT
** * * * * * * * *
12823 CTTGGCATAAAAAATGATGCAAAATTGAGGCGGACCCCGGAATGCCTTTTTAGCCCAAAAA-TGT
503 CTT-GCACCAAAAATCATGCAAAACTGAAGCGGA-CCCGGAACGCGTTTTTTGGCCAAAAACCGT
* * *
12887 GATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCTCAAT
566 GAT-G-T-GTACACGATTTCAGCTAAAATTTTTCAAAAATTGACCCGAAAGATTTTTTCCTCAAT
*
12952 TTCTAGCAAAAATAATCATAAAAA
628 TT-TAGCCAAAATAATCATAAAAA
* *
12976 ATATATAATTCAACGCCAAAAAAATTGAAAG-CTTGTTTCACACTTCTAATATCGAATTTCCTAT
1 ATATATAATTCAACGCCAAAAAGATTGAAAGACTT-TTTCACACTTCTAATATCGAATTTCATAT
* * * * *
13040 TTTATTTCCAAATTAATTGT-TGATTAAATCGAAACAAGATTTAGATACTCGTAAAAACGAATCC
65 TTT-TTT--AAATTAATT-TCTAATTAAATCAAAACAAGATTCAGATACTCGTAAAAACAAATAC
* * * *
13104 TT-GAATGCAATGAT-GCTGAGATTTGATTCGATGAATATAAATATATTTTAAGGAGTCT-TACT
126 TTCG-ATGCAATG-TCGCTGAGATTTGATTAGATGAATAT--AGATATTTCAAGGAGTCTCGAC-
* * *
13166 GCCAAAAATCATACAAAACTGA-CGTGGGGCCAA-AGAACGCG-TTTTGACCCCAAAAAAAAACT
186 GCCAAAAATCATACAAAACTAAGC-CGGGGCCAAGA-AACGCGCTTTT-A-CCC----AAAAACC
13228 GTGATGG-TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCTCAATTTT
243 GTGATGGTTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCTCAATTTT
* * * * * *
13292 TAGCCACAATACTCATAAAAAATATAT-ATTCCAACGCCAAAAATATTGAAGGGCTTCTCACCCT
308 TGGCTAAAATACTCATAAAAAATATATAATT-CAACGCCAAAAAGATTGAAGGGCTTTTCACGCT
* * * *
13356 TCTAATATCG-TT-TTTTTTC-AAATTAATTTCTAATTAAATCGAAACATGATTCAAATGCTCGT
372 TCTAATATCGTTTATTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGT
* *
13418 AAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTGGATGAATATGGATATTTCAAAAAG
437 AAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATGGATATTTCAAAGAG
* *
13483 TTTTGCCACCAAAAATTATGCAAAACTGAAGCAGGACTCCGGAACGCGTTTTTTTGGCCAAAAAC
502 TCTTG-CACCAAAAATCATGCAAAACTGAAGC-GGAC-CCGGAACGCG-TTTTTTGGCCAAAAA-
* * *
13548 CCGTGATG-GTACACGATTTACAGCT-AAATCTTTTCAAAAATTTACCCGAAATA-GTTTTCCTC
562 CCGTGATGTGTACACGATTT-CAGCTAAAAT-TTTTCAAAAATTGACCCGAAAGATTTTTTCCTC
* *
13610 AAGTTTTAGCCAAAATACTCACAATATATA
625 AA-TTTTAGCCAAAATAATCATAA-A-A-A
* * * * * ** *
13640 TATATATAATTTAACTCCAAAAAGATTGGAAGACTTTTTCACGCTTTTAATATCGTTTTTCATGT
1 -ATATATAATTCAACGCCAAAAAGATTGAAAGACTTTTTCACACTTCTAATATCGAATTTCATAT
* * *
13705 TTTTTTTAATTAATTTCTAATTCAATCAAAACAAGATTCAGATACTCGTAAAAACAAATATTTCG
65 TTTTTTAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATACTCGTAAAAACAAATACTTCG
*
13770 ATTCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAAT
130 ATGCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAAT
* ** * ** *
13835 CATGCAAAACTAAGCCGGGGCCCCGAAACGTGCTTTTAGGCAGAAACCGTGATGGTTTACACGAT
195 CATACAAAACTAAGCCGGGGCCAAGAAACGCGCTTTTACCCAAAAACCGTGATGG-TTACACGAT
* * * * *
13900 TTCGGCTAAAATTTTCCAAAAAATGATCCGAAAAATTTTTCCTCAACTTTTGGCTAAAATACTCA
259 TTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTT-CTCAATTTTTGGCTAAAATACTCA
* * * * * *
13965 TAAAATATATATAATTTAACGCCAAAAAGATTGGAGGACTTTTCACGATTTTAATATCGTTTTTC
323 TAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCG--TTT-
* * * * * *
14030 ATATTTTTCTGAATTAATTTCTAATTAAATTGAAATAAGATTCAGATACTTGTAAATACAAATTC
385 AT-TTTTTCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * ** * * * *
14095 TTAAATCCAATGTAGCTGAGATTTTATTAGATAAATATGGATATCTCAAAGAGGCTTGGAGCCAA
449 TTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATGGATATTTCAAAGAGTCTTGCA-CCAA
* * * * * *
14160 AAATCATGCAAAACT-TAGCCGGGGCCCTAGAACGCG-TTTTTAGTCAAAAACCGTGATGATTAT
513 AAATCATGCAAAACTGAAG-C-GGACCC-GGAACGCGTTTTTTGGCCAAAAACCGTGATG--T-G
* * *
14223 TACACGATTT-TGACTAAAATTTTGT-AAAAGTTGACCCGAAAG-TTATTTCCTCAATTTTTAGC
572 TACACGATTTCAG-CTAAAATTTT-TCAAAAATTGACCCGAAAGATTTTTTCCTCAA-TTTTAGC
* *
14285 CACAATATTCATAAAAA
634 CAAAATAATCATAAAAA
* * * * *** * *
14302 TTATATAATTCAATGCCATAAAGATTGAAGGGA--TTTTCATGTTTCTCAA-ATC-ATTTTTCCT
1 ATATATAATTCAACGCCAAAAAGATTGAA-AGACTTTTTCACACTTCT-AATATCGA-ATTTCAT
** * * * * * *** *
14363 ATTATTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTTGTTTTAA-AAATTC
63 ATT-TTTT-TAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATACTCGTAAAAACAAATAC
** * * * * * * * *
14427 TTAAATTCAATATGGATGAGATTTGGTTAGATAAATATAGATATTTCAAGGA-TCTAGTCGCCAA
126 TTCGATGCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAA
14491 AAATCAT
191 AAATCAT
14498 GCAACAATGA
Statistics
Matches: 1232, Mismatches: 220, Indels: 150
0.77 0.14 0.09
Matches are distributed among these distances:
655 12 0.01
657 44 0.04
658 66 0.05
659 4 0.00
660 87 0.07
661 174 0.14
662 240 0.19
663 36 0.03
664 19 0.02
665 227 0.18
666 19 0.02
668 1 0.00
669 57 0.05
670 96 0.08
671 70 0.06
672 68 0.06
673 1 0.00
675 1 0.00
676 10 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (650 bp):
ATATATAATTCAACGCCAAAAAGATTGAAAGACTTTTTCACACTTCTAATATCGAATTTCATATT
TTTTTAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATACTCGTAAAAACAAATACTTCGA
TGCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATC
ATACAAAACTAAGCCGGGGCCAAGAAACGCGCTTTTACCCAAAAACCGTGATGGTTACACGATTT
CGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCTCAATTTTTGGCTAAAATACTCATAA
AAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTATTTTT
TCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC
CAATGTGGCTAAGATTTGGTTAGATGAATATGGATATTTCAAAGAGTCTTGCACCAAAAATCATG
CAAAACTGAAGCGGACCCGGAACGCGTTTTTTGGCCAAAAACCGTGATGTGTACACGATTTCAGC
TAAAATTTTTCAAAAATTGACCCGAAAGATTTTTTCCTCAATTTTAGCCAAAATAATCATAAAAA
Found at i:13811 original size:336 final size:326
Alignment explanation
Indices: 12306--14532 Score: 1724
Period size: 336 Copynumber: 6.7 Consensus size: 326
12296 ATATATATAT
* * * * * *
12306 ATATATAATTCAACACAAGAAAATATTGGAGGACTTTTCACGTTTTTAATATCGTTTTTCATATT
1 ATATATAATTCAACGCCA-AAAAGATTGGAAGACTTTTCACGCTTCTAATATCGTTTTTCATATT
* * *
12371 TTTGCTGAATTAATTTCTAATTAAATCCAAACAAGATTCAGATGATGCACGTAAAAACAAATCCT
65 TTT-TTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT-A--CTCGTAAAAACAAATCCT
* * * * * **
12436 TAAATCCCATGTAGCTAAGATTTGATTAGATAAATAAAGATATTT-AAAGGAATCTCGGTGCCAA
126 TAAATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAA-GAGTCTTGCCGCCAA
* * * *
12500 AAATCATGCAAAACAG-AGTCGTGACCCCGAAACACGTTTTTA-GCCAAAAACCGTAATAGTTAG
190 AAATCATGCAAAACTGAAG-CG-GACCCCGGAACGCGTTTTTAGGCCAAAAACCGTGAT-G---G
* * * * * * *
12563 TATATGATTTCGACTAAATTTTTGCAAAAATTGAGCCGAACGATA-TTTCCTCAATTTTTGGCTA
249 TACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAA--ATATTTTCCTCAATTTTTAGCCA
12627 AAATACTCATTAAAAA
312 AAATACTCA-TAAAAA
** *** * * * * *
12643 ATATATAATTTGACATGAAAAAGATT-GAAGGGCTTTTAACGCTTCAAATATTGTTTTTCCTATT
1 ATATATAATTCAACGCCAAAAAGATTGGAA-GACTTTTCACGCTTCTAATATCGTTTTTCATATT
* * * *
12707 TTTTCTGAATTAATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAAAAAATCTTTAA
65 TTTT-TGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAA
* * * * * * * ***
12772 ATCCAATGTGGCTAAGATTTGGTTTAGATGAATTTAAACATTTCAAGGAGTCTTGGCATAAAAAA
129 ATCCAATGTAGCTAAGATTT-GATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAAAA
* * * * * * * *
12837 TGATGCAAAATTGAGGCGGACCCCGGAATGCCTTTTTAGCCCAAAAA-TGTGATGGTTAGTATAC
193 TCATGCAAAACTGAAGCGGACCCCGGAACGCGTTTTTAGGCCAAAAACCGTGAT-G---GTACAC
* * *
12901 GATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATTTTTTCCTCAATTTCTAGCAAAAATA
254 GATTTCGGCTAAAATTTTGCAAAAATTGACCCG-AA-ATATTTTCCTCAATTTTTAGCCAAAATA
*
12966 ATCATAAAAA
317 CTCATAAAAA
* * * ** *
12976 ATATATAATTCAACGCCAAAAAAATTGAAAG-CTTGTTTCACACTTCTAATATCGAATTTCCTAT
1 ATATATAATTCAACGCCAAAAAGATTGGAAGAC-T-TTTCACGCTTCTAATATCGTTTTTCATAT
* * * *
13040 TTTATTTCCAAATTAATTGT-TGATTAAATCGAAACAAGATTTAGATACTCGTAAAAACGAATCC
64 TTT-TTT--GAATTAATT-TCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCC
* * * * * * * * *
13104 TTGAATGCAATG-ATGCTGAGATTTGATTCGATGAATATAAATATATTTTAAGGAGTCTTACTGC
125 TTAAATCCAATGTA-GCTAAGATTTGATTAGATGAATAT--AGATATTTCAAAGAGTCTTGCCGC
* * * * *** * ** *
13168 CAAAAATCATACAAAACTGACGTGGGGCCAAAGAACGCGTTTTGACCCCAAAAAAAAACTGTGAT
187 CAAAAATCATGCAAAACTGAAG-CGGACCCCGGAACGCGTTTTTAGGCC----AAAAACCGTGAT
*
13233 GGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCTCAATTTTTAGCCA
247 GGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTCCTCAATTTTTAGCCA
*
13298 CAATACTCATAAAAA
312 AAATACTCATAAAAA
* * * *
13313 ATATAT-ATTCCAACGCCAAAAATATT-GAAGGGCTTCTCACCCTTCTAATATCG----T--T-T
1 ATATATAATT-CAACGCCAAAAAGATTGGAA-GACTTTTCACGCTTCTAATATCGTTTTTCATAT
** * * *
13369 TTTTTCAAATTAATTTCTAATTAAATCGAAACATGATTCAAATGCTCGTAAAAACAAATCCTTAA
64 TTTTTTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAA
* * * * * * *
13434 ATCCAATGTGGCTAAGATTTGGTTGGATGAATATGGATATTTCAAAAAGTTTTGCCACCAAAAAT
129 ATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAAAAT
* * *
13499 TATGCAAAACTGAAGCAGGACTCCGGAACGCGTTTTTTTGGCCAAAAACCCGTGATGGTACACGA
194 CATGCAAAACTGAAGC-GGACCCCGGAACGCG-TTTTTAGGCCAAAAA-CCGTGATGGTACACGA
* * * *
13564 TTTACAGCT-AAATCTTTTCAAAAATTTACCCGAAATAGTTTTCCTCAAGTTTTAGCCAAAATAC
256 TTT-CGGCTAAAAT-TTTGCAAAAATTGACCCGAAATA-TTTTCCTCAATTTTTAGCCAAAATAC
*
13628 TCACAATATATA
318 TCATAA-A-A-A
* * * *
13640 TATATATAATTTAACTCCAAAAAGATTGGAAGACTTTTTCACGCTTTTAATATCGTTTTTCATGT
1 -ATATATAATTCAACGCCAAAAAGATTGGAAGAC-TTTTCACGCTTCTAATATCGTTTTTCATAT
* * * ** **
13705 TTTTTTTAATTAATTTCTAATTCAATCAAAACAAGATTCAGATACTCGTAAAAACAAATATTTCG
64 TTTTTTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAA
* * * * * *
13770 ATTCAATGTCGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAAT
129 ATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAAAAT
* * * * *
13835 CATGCAAAACT-AAGCCGGGGCCCCGAAACGTGCTTTTAGG-CAGAAACCGTGATGGTTTACACG
194 CATGCAAAACTGAAG-C-GGACCCCGGAACGCGTTTTTAGGCCAAAAACCGTGATGG--TACACG
* * * * * * *
13898 ATTTCGGCTAAAATTTTCCAAAAAATGATCCGAAAAATTTTTCCTCAACTTTTGGCTAAAATACT
255 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATA-TTTTCCTCAATTTTTAGCCAAAATACT
*
13963 CATAAAAT
319 CATAAAAA
* * * *
13971 ATATATAATTTAACGCCAAAAAGATTGGAGGACTTTTCACGATTTTAATATCGTTTTTCATATTT
1 ATATATAATTCAACGCCAAAAAGATTGGAAGACTTTTCACGCTTCTAATATCGTTTTTCATATTT
* * * * * *
14036 TTCTGAATTAATTTCTAATTAAATTGAAATAAGATTCAGATACTTGTAAATACAAATTCTTAAAT
66 TTTTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAAT
* * * * * * **
14101 CCAATGTAGCTGAGATTTTATTAGATAAATATGGATATCTCAAAGAGGCTTGGAGCCAAAAATCA
131 CCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAAAATCA
* * ** * *
14166 TGCAAAACT-TAGCCGGGGCCCTAGAACGCGTTTTTA-GTCAAAAACCGTGATGATTATTACACG
196 TGCAAAACTGAAG-C-GGACCCCGGAACGCGTTTTTAGGCCAAAAACCGTGATG----GTACACG
* * * * * *
14229 ATTTTGACTAAAATTTTGTAAAAGTTGACCCGAAAGT-TATTTCCTCAATTTTTAGCCACAATAT
255 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAA-TAT-TTTCCTCAATTTTTAGCCAAAATAC
14293 TCATAAAAA
318 TCATAAAAA
* * * * * * *
14302 TTATATAATTCAATGCCATAAAGATT-GAAGGGA-TTTTCATGTTTCTCAA-ATCATTTTTCCTA
1 ATATATAATTCAACGCCAAAAAGATTGGAA--GACTTTTCACGCTTCT-AATATCGTTTTTCATA
* * * * * *** *
14364 TTATTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCTGATGCTTGTTTTAA-AAATTCT
63 TT-TTTT-TGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCT
* * * * * * * * * *
14428 TAAATTCAATATGGATGAGATTTGGTTAGATAAATATAGATATTTCAAGGA-TCTAGTCGCCAAA
126 TAAATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAA
* * * *
14492 AATCATGCAACAA-TGAACCGGGGCCCCAGAACACGTTTTTA
191 AATCATGCAA-AACTGAAGC-GGACCCCGGAACGCGTTTTTA
14533 CTCAAAAACT
Statistics
Matches: 1525, Mismatches: 298, Indels: 140
0.78 0.15 0.07
Matches are distributed among these distances:
321 5 0.00
322 22 0.01
323 25 0.02
324 72 0.05
325 8 0.01
326 79 0.05
327 1 0.00
328 24 0.02
329 207 0.14
330 35 0.02
331 148 0.10
332 62 0.04
333 176 0.12
334 157 0.10
335 42 0.03
336 289 0.19
337 103 0.07
338 20 0.01
339 38 0.02
342 6 0.00
343 6 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (326 bp):
ATATATAATTCAACGCCAAAAAGATTGGAAGACTTTTCACGCTTCTAATATCGTTTTTCATATTT
TTTTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAAT
CCAATGTAGCTAAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTTGCCGCCAAAAATCA
TGCAAAACTGAAGCGGACCCCGGAACGCGTTTTTAGGCCAAAAACCGTGATGGTACACGATTTCG
GCTAAAATTTTGCAAAAATTGACCCGAAATATTTTCCTCAATTTTTAGCCAAAATACTCATAAAA
A
Found at i:15188 original size:594 final size:592
Alignment explanation
Indices: 14006--15116 Score: 1250
Period size: 594 Copynumber: 1.9 Consensus size: 592
13996 TGGAGGACTT
* *
14006 TTCACGATTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATTGAAATAAGAT
1 TTCACGATTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * * * * * *
14071 TCAGATACTTGTAAATACAAATTCTTAAATCCAATGTAGCTGAGATTTTATTAGATAAATATGGA
66 CCAGATACTCGTAAAAACAAATCCTTAAATCCAATGGAGCTGAGATTTGATAAGATAAATATAGA
* * * * *
14136 TATCTCAAAGAGGCTTGGAGCCAAAAATCATGCAAAACTTAGCCGGGGCCCTAGAACGCGTTTTT
131 TATCTCAAAGAGGCTTCGAGCCAAAAATCAAGCAAAACTTAGCCGGGCCCCGAGAACACGTTTTT
** ** * * **** *
14201 AGTCAAAAACCGTGATGATTATTACACGATTTTGACTAAAATTTTGTAAAAGTTGACCCGAAAGT
196 AGGAAAAAACAATGATGATTAGTACACGATTTCGACTAAAATTTTGTAAAAAAAAACCCGAAAAT
* * *
14266 TATTTCCTCAATTTTTAGCCACAATATTCATAAAAATTATATAATTCAATGCCATAAAGATTGAA
261 TATTTCCTCAATTTTTAGCCAAAATACTCATAAAAATTATATAATTCAATGCCAAAAAGATTGAA
* * *
14331 GGGATTTTCATGTTTCTCAAATCATTTTTCCTATTATTTTCCGAATTAATTTCTAATTAAATCGA
326 GGGATTTTCACGTTTCTCAAAGCATTTTTCATATTATTTTCCGAATTAATTTCTAATTAAATCGA
* * * *** * *
14396 AACATGATTCTGATGCTTGTTTTAAAAATTCTTAAATTCAATATGGATGAGATTTGGTTAGATAA
391 AACATAATTCAGATGCTCGTAAAAAAAATCCTTAAATTCAATATGGATGAGATTTGATTAGATAA
* * * *
14461 ATATAGATATTTCAAGGATCTAGTCGCCAAAAATCATGCAACAATGAACCGGGGCCCCAGAACAC
456 ATATAGATATCTCAAGGATCTAGGCGCCAAAAATCATGCAACAATGAACCAGGACCCCAGAACAC
*
14526 GTTTTTACTCAAAAACTGTAATTTTGACTAACGTACACGATTTCGCTTAATATTTTGAAAAAATT
521 GTTTTTACTCAAAAACTGTAA--TTGACTAACGTACACGATTTCGCTTAATAATTTGAAAAAATT
14591 GACCAAAAA
584 GACCAAAAA
* ** *
14600 TTCACGTTTTTAATATCGTTTTTCATATTTTTCTTCATTAATTTCTAATTAAATCGAAACAATAT
1 TTCACGATTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * * *
14665 CCAGATACTCGTAAAAACTAATCCTTAAATGCAATGGGGCTGAGATTTGATAAGTTGAATATAGA
66 CCAGATACTCGTAAAAACAAATCCTTAAATCCAATGGAGCTGAGATTTGATAAGATAAATATAGA
* * * * *
14730 TATTTCAAGGAGTC-TCGATGCCAAAAATCAAGCAAAACTTGGCTTGGGCCCCGA-AACACGTTT
131 TATCTCAAAGAGGCTTCGA-GCCAAAAATCAAGCAAAACTTAGC-CGGGCCCCGAGAACACGTTT
* * * *
14793 TTCGGGGAAAAAACATAATGATGGTTAGTACACGATTTCGGCTAAAATTTTGTTAAAAAAAAATC
194 TT--AGGAAAAAAC--AATGATGATTAGTACACGATTTCGACTAAAATTTTG-TAAAAAAAAACC
* * * * * *
14858 TGAAAATTTTTTCCTCAATTTTTGGCTAAAATACTCAT-GAAATATATATAATTTAATGCCAAAA
254 CGAAAATTATTTCCTCAATTTTTAGCCAAAATACTCATAAAAAT-TATATAATTCAATGCCAAAA
* * * * * *
14922 ATATTGGA-GGACTTTTCACGCTTT-TCATAGCGTTTTTTATATT-TTTTCTGAATTAATTTCTA
318 AGATTGAAGGGA-TTTTCACG-TTTCTCAAAGCATTTTTCATATTATTTTCCGAATTAATTTCTA
* * * *
14984 ATTAAATCGAAA-TTAAATTCAGATGCTCGTAAAAACAAATCCTTAAATGT-AATGTGGGTTAGA
381 ATTAAATCGAAACAT-AATTCAGATGCTCGTAAAAA-AAATCCTTAAAT-TCAATATGGATGAGA
* * * * *
15047 TTTGATTAGATGAATATAGATATCTCAAGTAGTCTTGGCGCCAAAAATTATGCAA-AACTGACCC
443 TTTGATTAGATAAATATAGATATCTCAAGGA-TCTAGGCGCCAAAAATCATGCAACAA-TGAACC
15111 AGGACC
506 AGGACC
15117 TTGGAACGCG
Statistics
Matches: 419, Mismatches: 83, Indels: 24
0.80 0.16 0.05
Matches are distributed among these distances:
593 3 0.01
594 154 0.37
595 7 0.02
596 7 0.02
597 1 0.00
598 81 0.19
599 133 0.32
600 33 0.08
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (592 bp):
TTCACGATTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
CCAGATACTCGTAAAAACAAATCCTTAAATCCAATGGAGCTGAGATTTGATAAGATAAATATAGA
TATCTCAAAGAGGCTTCGAGCCAAAAATCAAGCAAAACTTAGCCGGGCCCCGAGAACACGTTTTT
AGGAAAAAACAATGATGATTAGTACACGATTTCGACTAAAATTTTGTAAAAAAAAACCCGAAAAT
TATTTCCTCAATTTTTAGCCAAAATACTCATAAAAATTATATAATTCAATGCCAAAAAGATTGAA
GGGATTTTCACGTTTCTCAAAGCATTTTTCATATTATTTTCCGAATTAATTTCTAATTAAATCGA
AACATAATTCAGATGCTCGTAAAAAAAATCCTTAAATTCAATATGGATGAGATTTGATTAGATAA
ATATAGATATCTCAAGGATCTAGGCGCCAAAAATCATGCAACAATGAACCAGGACCCCAGAACAC
GTTTTTACTCAAAAACTGTAATTGACTAACGTACACGATTTCGCTTAATAATTTGAAAAAATTGA
CCAAAAA
Found at i:16612 original size:980 final size:969
Alignment explanation
Indices: 14867--16640 Score: 2231
Period size: 980 Copynumber: 1.8 Consensus size: 969
14857 CTGAAAATTT
* * * * * * *
14867 TTTCCTCAATTTTTGGCTAAAATACTCATGAAATATATATAATTTAATGCCAAAAATATTGGAGG
1 TTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAATCTAATGCCAAAAAAATTGAAGG
* *
14932 ACTTTTCACGCTTTTCATAGCGTTTTTTATATTTTTTCTGAATTAATTTCTAATTAAATCGAAAT
66 ACTTTTCACGCTTTTAATAGCGTTTTTAATATTTTTTCTGAATTAATTTCTAATTAAATCGAAAT
* * * * *
14997 TAAATTCAGATGCTCGTAAAAACAAATCCTTAAATGTAATGTGGGTTAGATTTGATTAGATGAAT
131 CAAATTCAAATGCTCGTAAAAACAAATCCTTAAATGCAATGCGGCTTAGATTTGATTAGATGAAT
* * ** *
15062 ATAGATATCTCAAGTAGTCTTGGCGCCAAAAATTATGCAAAACTGACCCAGGACCTTGGAACGCG
196 ATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCCAGGACCCCGAAACGCG
* * * * * *
15127 TTTTTACCTAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTGCAAAAATTGACCCGA
261 TTTTTACCAAAAAACCATGATGATTAGTACACGATTTCGACTAAAATTTCCAAAAATTGACCCAA
* * *
15192 AAGATATTTCCTCAATTTTTGGCTAAAATACTCATTAAAAAATATATAATTCGACATGAAAAGGA
326 AAAATATTTCCTCAATTTTTGGCTAAAATACTCATTAAAAAATATATAATTCAACATGAAAAAGA
* * *
15257 TTGAAGGGCTTTTAACGCTTATAATATTGTTTTTCCTATTTTTTCAGAATTAATTTTTAATTAAA
391 TTGAAGGACTTTTAACGCTTATAATATCGTTTTTCCTATTTTTT-A-AATTAATTTCTAATTAAA
* * * *
15322 TCGAAACAAGATTTTGATGCTCGTAAAAACAAATCCTTAAAACCAATATGGTTGAGATTTGATTA
454 TCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAAACCAATATGGCTGAAATTTAATTA
* * ** **
15387 GATGAATATAAATATTTCAAGGAGTCTTCGCGAAAAAATCATGCAAAACTGACTCGGGGCCCCGG
519 GATGAATATAAATATCTCAAGGAGTCTTCGCGAAAAAATCATGCAAAACTGACTCAGACCCCCAA
* * *
15452 AATGCGTTTTAGCCATAAAAACCTTGATGGTACACAATTTCGGCGAATATTTTGAATTGACCCGA
584 AACGCGTTTTAGCCA-AAAAACCTTGATGATACACAATTTCGGCGAAAATTTTGAATTGACCCGA
* * *
15517 AATATTTTTCCTCAATTTAGCCACAATACTCATTAAAAAATATATAATTCAATGCCAAAAAAATT
648 AAGATTTTTCCTCAATTTAGCCAAAATACTCATTAAAAAATATATAATTCAACGCCAAAAAAATT
* * *
15582 TGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCGAATTAATTTCTAATTAAAT
713 TGAAGGGCTTTTAACGCTTCTAATATCGTTTTTCCTATATTTTCCGAATTAATTTCTAATTAAAT
*
15647 CGAAACATGATTCAGATTCTTGTAAAAAAAAATTGTTGGGATTTGATTAGAGGAATATAGATATT
778 CGAAACAAGATTCAGATTCTTGTAAAAAAAAATTGTTGGGATTTGATTAGAGGAATATAGATATT
15712 TTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAACAGGACCCCGGAACGCGGTTTTAGTAA
843 TTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAACAGGACCCCGGAACGCGGTTTTAGTAA
15777 AAAACCTTGATAATTGTTACACGATTTCGGCTAAAATTTTGCAAAAATTGTCCCGAAAGATA
908 AAAACCTTGATAATTGTTACACGATTTCGGCTAAAATTTTGCAAAAATTGTCCCGAAAGATA
*
15839 TTTCCTCAA-TTTTAGCCACAATACTCATAAAAAAATATATAATCTAATGCCAAAAAAATTGAAG
1 TTTCCTCAATTTTTAGCCAAAATACTCAT-AAAAAATATATAATCTAATGCCAAAAAAATTGAAG
* *
15903 GGCTTTTCACGCTTTTAATATCGTTTTTAATATTTTTTCTGAATTAATTATTTCTAATTAAATCG
65 GACTTTTCACGCTTTTAATAGCGTTTTTAATATTTTTTCTGAATT-A--ATTTCTAATTAAATCG
* * *
15968 AAA-CAAGATTCAAATGCTCGTAAAAATAAATCGTTAAATGCAATGCGGCTATA-ATTTTATTAG
127 AAATCAA-ATTCAAATGCTCGTAAAAACAAATCCTTAAATGCAATGCGGCT-TAGATTTGATTAG
* * * * * *
16031 ATGAATATAGATATTTCAAGGAGTACTCTCGGCGTCAAAAATCATGCATAACTGAGCCGGGGCCC
190 ATGAATATAGATATCTCAAGGAGT-CT-T-GGCGCCAAAAATCATGCAAAACTGACCCAGGACCC
* * *
16096 CGAAACGCGTTTATATA-CAAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTCCCA
252 CGAAACGCGTTT-T-TACCAAAAAACCATGATGATTAGTACACGATTTCGACTAAAA-TTT-CCA
* * * *
16160 AAAA-TGACCCAAAAAA-ATTTTCGTCAATTTTTTGCATATAATACTCA-TAAAAGATATATAAT
313 AAAATTGACCCAAAAAATA-TTTCCTCAATTTTTGGC-TAAAATACTCATTAAAAAATATATAAT
* * * *
16222 TTAACGCT-AAAAAGATTTG-AGGACTTTTGACGCTTTTAATATCGTTTTT-CT-TTTTTT-AAT
376 TCAAC-ATGAAAAAGA-TTGAAGGACTTTTAACGCTTATAATATCGTTTTTCCTATTTTTTAAAT
* * * * * *
16282 TAATTTCTAATT-AATTGAAATAAGATTTAGATGCTCGTAAAAA-AAATTCTTAAATCGAATGTG
439 TAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAAACCAATATG
** * *
16345 GCTGAAATTTAATTAGATGAATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAAC
504 GCTGAAATTTAATTAGATGAATATAAATATCTCAAGGAGTCTTCGCG-AAAAAATCATGCAAAAC
* * * *
16410 TGAGTCAGACCCCCAAAACGCTTTGTTAGCC-AAAAA-CTGTGATGATTATACACGATTTCGGCT
568 TGACTCAGACCCCCAAAACGCGTT-TTAGCCAAAAAACCT-TGATG---ATACACAATTTCGGCG
* *
16473 AAAATTTTGTAAAAATTGACCCGAAAGATATTTT-CTCAATTTTTGGCTAAAATACTCA-T-AAA
628 AAAATTTTG----AATTGACCCGAAAGAT-TTTTCCTCAA--TTTAGCCAAAATACTCATTAAAA
* * * *
16535 AATATATAATTCAACG-CAAAAAAGTTTTGAAGGGTTTTTAACGTTTCTAATATC-TCTTTTCTT
686 AATATATAATTCAACGCCAAAAAA-ATTTGAAGGGCTTTTAACGCTTCTAATATCGT-TTTTCCT
*
16598 ATATTTTCCGAATTAATTTCTAATTAAATTGAAACAAGATTCA
749 ATATTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCA
16641 AATGCTCATA
Statistics
Matches: 675, Mismatches: 95, Indels: 56
0.82 0.12 0.07
Matches are distributed among these distances:
971 16 0.02
972 82 0.12
973 67 0.10
974 62 0.09
975 107 0.16
976 25 0.04
977 1 0.00
978 44 0.07
979 44 0.07
980 188 0.28
981 25 0.04
982 14 0.02
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (969 bp):
TTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATATATAATCTAATGCCAAAAAAATTGAAGG
ACTTTTCACGCTTTTAATAGCGTTTTTAATATTTTTTCTGAATTAATTTCTAATTAAATCGAAAT
CAAATTCAAATGCTCGTAAAAACAAATCCTTAAATGCAATGCGGCTTAGATTTGATTAGATGAAT
ATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGACCCAGGACCCCGAAACGCG
TTTTTACCAAAAAACCATGATGATTAGTACACGATTTCGACTAAAATTTCCAAAAATTGACCCAA
AAAATATTTCCTCAATTTTTGGCTAAAATACTCATTAAAAAATATATAATTCAACATGAAAAAGA
TTGAAGGACTTTTAACGCTTATAATATCGTTTTTCCTATTTTTTAAATTAATTTCTAATTAAATC
GAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAAACCAATATGGCTGAAATTTAATTAGA
TGAATATAAATATCTCAAGGAGTCTTCGCGAAAAAATCATGCAAAACTGACTCAGACCCCCAAAA
CGCGTTTTAGCCAAAAAACCTTGATGATACACAATTTCGGCGAAAATTTTGAATTGACCCGAAAG
ATTTTTCCTCAATTTAGCCAAAATACTCATTAAAAAATATATAATTCAACGCCAAAAAAATTTGA
AGGGCTTTTAACGCTTCTAATATCGTTTTTCCTATATTTTCCGAATTAATTTCTAATTAAATCGA
AACAAGATTCAGATTCTTGTAAAAAAAAATTGTTGGGATTTGATTAGAGGAATATAGATATTTTA
AGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAACAGGACCCCGGAACGCGGTTTTAGTAAAAA
ACCTTGATAATTGTTACACGATTTCGGCTAAAATTTTGCAAAAATTGTCCCGAAAGATA
Found at i:21404 original size:25 final size:27
Alignment explanation
Indices: 21342--21413 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 27
21332 AATAAGTTTG
*
21342 TAAGAAAATAAGTTCATAATAAGATTATC
1 TAAG-AAA-AAGTTCATAATAAGATAATC
*
21371 TCAAAAAAAAGTTCATAATAAGA-AAT-
1 T-AAGAAAAAGTTCATAATAAGATAATC
21397 TAAG-AAAAGTTTCATAA
1 TAAGAAAAAG-TTCATAA
21414 GAAAAGTAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 5 0.13
25 9 0.24
26 1 0.03
27 2 0.05
28 15 0.39
29 4 0.11
30 2 0.05
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.28
Consensus pattern (27 bp):
TAAGAAAAAGTTCATAATAAGATAATC
Found at i:22030 original size:2 final size:2
Alignment explanation
Indices: 22023--22054 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22013 CTAGCTGCTA
22023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22055 GAAAAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23140 original size:22 final size:22
Alignment explanation
Indices: 23112--23153 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
23102 ATAACTTCCA
23112 GAAAACAATTTCTGTATTTTCT
1 GAAAACAATTTCTGTATTTTCT
23134 GAAAACAATTTCTGTATTTT
1 GAAAACAATTTCTGTATTTT
23154 TGATGTTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (22 bp):
GAAAACAATTTCTGTATTTTCT
Found at i:27494 original size:134 final size:134
Alignment explanation
Indices: 27351--27604 Score: 499
Period size: 134 Copynumber: 1.9 Consensus size: 134
27341 GCTAAATGTG
*
27351 TATATATATATACTAGTTAAAGCACGTGCGCTGCACGTATTTTAATAATTTATAAATAATGAATT
1 TATATATATATACTAGTTAAAGCACGTGCACTGCACGTATTTTAATAATTTATAAATAATGAATT
27416 AAATAAATATAATAAATCACATAATAATTTGTATCTTCCTTTGACATTTGATAAATCATATAATT
66 AAATAAATATAATAAATCACATAATAATTTGTATCTTCCTTTGACATTTGATAAATCATATAATT
27481 TGTA
131 TGTA
27485 TATATATATATACTAGTTAAAGCACGTGCACTGCACGTATTTTAATAATTTATAAATAATGAATT
1 TATATATATATACTAGTTAAAGCACGTGCACTGCACGTATTTTAATAATTTATAAATAATGAATT
27550 AAATAAATATAATAAATCACATAATAATTTGTATCTTCCTTTGACATTTGATAAA
66 AAATAAATATAATAAATCACATAATAATTTGTATCTTCCTTTGACATTTGATAAA
27605 GCAAAAATTA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 119 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.39
Consensus pattern (134 bp):
TATATATATATACTAGTTAAAGCACGTGCACTGCACGTATTTTAATAATTTATAAATAATGAATT
AAATAAATATAATAAATCACATAATAATTTGTATCTTCCTTTGACATTTGATAAATCATATAATT
TGTA
Done.