Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011138.1 Corchorus capsularis cultivar CVL-1 contig11159, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12866
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35


Found at i:6820 original size:5 final size:5

Alignment explanation


    Indices: 6810--6835  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       6800 ATTACAGTTG

                                           
       6810 TTTAA TTTAA TTTAA TTTAA TTTAA T
          1 TTTAA TTTAA TTTAA TTTAA TTTAA T

       6836 ATAAGCCAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (5 bp):   
TTTAA

Done.