genome.fa.s11139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011139.1 Corchorus capsularis cultivar CVL-1 contig11160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269874

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024--5063	7	5.7	7	93	0	71	27	42	2	27	1.68
7221--7245	2	12.5	2	100	0	50	52	0	0	48	1.00
39532--39788	89	3.0	89	92	6	419	33	12	22	31	1.91
39642--39800	78	2.0	78	100	0	318	37	13	22	26	1.91
45539--45565	2	13.5	2	100	0	54	51	0	48	0	1.00
53235--53566	84	4.0	83	86	3	407	37	24	18	18	1.93
58367--58395	14	2.1	14	100	0	58	44	6	6	41	1.58
70043--70069	9	3.0	9	100	0	54	0	11	33	55	1.35
72577--72614	2	19.0	2	94	0	67	50	2	0	47	1.15
79657--79713	28	2.0	28	100	0	114	49	0	21	29	1.50
80170--80197	2	14.0	2	100	0	56	50	0	0	50	1.00
87945--87973	9	3.0	10	90	10	51	20	20	0	58	1.39
87945--87973	5	6.0	5	92	8	51	20	20	0	58	1.39
95676--95706	3	10.3	3	100	0	62	64	0	0	35	0.94
109510--110052	272	2.0	271	98	1	1061	39	16	16	27	1.90
109990--110022	6	5.5	6	96	0	57	87	12	0	0	0.53
121116--121271	78	2.0	78	96	0	285	15	29	27	27	1.96
121237--121338	50	2.0	50	96	0	186	19	30	30	19	1.97
127425--127475	21	2.5	21	93	3	86	21	17	9	50	1.74
130222--130282	30	2.0	30	81	6	70	59	3	19	18	1.52
132554--132578	6	4.2	6	100	0	50	0	52	32	16	1.44
132578--132629	24	2.2	24	85	0	68	46	38	15	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149850--149875	13	2.0	13	100	0	52	53	0	15	30	1.42
167047--167182	68	2.0	68	100	0	272	36	11	16	35	1.85
168366--168416	3	17.0	3	95	0	93	64	0	0	35	0.94
172757--172791	17	2.1	17	100	0	70	60	5	5	28	1.43
178338--178781	117	3.8	117	82	4	499	37	11	23	27	1.89
181655--181732	21	4.0	21	73	20	80	41	14	11	33	1.81
181666--181740	36	2.1	35	97	2	141	45	10	10	33	1.73
184428--184625	98	2.1	92	81	11	222	35	10	6	48	1.62
185241--187448	330	6.7	322	72	10	1316	33	14	15	35	1.89
186898--189033	657	3.3	628	83	7	2502	33	14	16	35	1.89
187527--189022	333	4.5	330	77	9	1530	33	14	16	35	1.89
189723--191842	632	3.3	638	82	9	2145	33	14	16	35	1.89
189989--190955	334	2.9	327	76	9	1034	33	14	16	34	1.90
190954--194835	333	11.7	328	77	8	3394	32	14	16	35	1.90
190975--195039	664	6.1	661	82	5	4257	32	15	16	35	1.90
195291--196040	328	2.3	330	85	3	1003	32	13	15	38	1.86
208724--208837	55	2.1	55	98	0	219	31	16	7	43	1.77
210537--210576	20	2.0	20	85	0	53	80	15	5	0	0.88
210921--210953	2	16.5	2	100	0	66	51	0	0	48	1.00
219245--219348	51	2.0	51	98	0	199	40	18	15	25	1.90
219902--220014	57	2.0	57	87	3	165	37	19	14	29	1.91
226942--226970	14	2.1	14	100	0	58	34	27	6	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236760--237009	135	1.8	133	87	5	367	29	22	13	34	1.92
236956--237030	38	1.9	40	86	5	109	26	24	16	33	1.95
238413--238441	15	1.9	15	100	0	58	37	6	13	41	1.72
251161--251189	14	2.1	14	93	6	51	0	10	0	89	0.48
254289--254322	16	2.1	16	94	0	59	52	11	14	20	1.73
254727--254768	21	2.0	21	95	0	75	23	16	9	50	1.75
254744--254826	42	2.0	43	95	2	150	16	12	19	51	1.75
256161--256202	21	2.0	21	95	0	75	23	16	9	50	1.75
258430--258471	21	2.0	21	90	0	66	23	16	7	52	1.68
258911--258952	21	2.0	21	95	0	75	23	16	9	50	1.75
259383--259424	21	2.0	21	90	0	66	23	16	7	52	1.68
259400--259488	42	2.1	43	89	2	135	15	12	15	56	1.68
258158--259928	481	3.7	481	89	3	2813	35	14	18	32	1.90
259864--259916	21	2.3	23	84	9	74	24	15	9	50	1.73
265740--265764	11	2.3	11	100	0	50	40	16	16	28	1.89
267168--267198	2	15.5	2	100	0	62	48	0	0	51	1.00
269039--269086	25	1.9	25	95	0	87	18	39	18	22	1.92
269460--269504	21	2.1	21	91	0	72	28	26	6	37	1.82

Tables:   1

The End!