Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001114.1 Corchorus capsularis cultivar CVL-1 contig01114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:650 original size:10 final size:10

Alignment explanation


    Indices: 611--662  Score: 50
    Period size: 10  Copynumber: 4.8  Consensus size: 10

        601 ACACCATCGC

                      
        611 GCCATGCCCG
          1 GCCATGCCCG

               *        
        621 GCCTTGTCCGCG
          1 GCCATG-CC-CG

             *         
        633 CACCATGCCCG
          1 -GCCATGCCCG

                      
        644 GCCATGCCCG
          1 GCCATGCCCG

                     
        654 GCCAATGCC
          1 GCC-ATGCC

        663 ATACCATCCG


Statistics
Matches: 34,  Mismatches: 4, Indels: 7
        0.76            0.09        0.16

Matches are distributed among these distances:
  10   17  0.50
  11    9  0.26
  12    4  0.12
  13    4  0.12

ACGTcount: A:0.12, C:0.48, G:0.27, T:0.13


Consensus pattern (10 bp):   
GCCATGCCCG
Done.