Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011141.1 Corchorus capsularis cultivar CVL-1 contig11162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38601
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:140 original size:30 final size:32
Alignment explanation
Indices: 77--148 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
67 AATAATTAAT
*
77 TTTTTTTCCTGATTGGAGGCGATAGAAAGAGA
1 TTTTTTTCCTGATCGGAGGCGATAGAAAGAGA
109 TTTTTTTCCTGATCGGAGGCGATA-AAA-AGA
1 TTTTTTTCCTGATCGGAGGCGATAGAAAGAGA
139 TTTTTTTCCT
1 TTTTTTTCCT
149 TCTCTTCTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 13 0.33
31 3 0.08
32 23 0.59
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (32 bp):
TTTTTTTCCTGATCGGAGGCGATAGAAAGAGA
Found at i:2799 original size:31 final size:30
Alignment explanation
Indices: 2758--2816 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
2748 ACGGTGTCCG
*
2758 ATGTGGCACGCCACGTGTACCAAAAAGTGAC
1 ATGT-GCACGCCACATGTACCAAAAAGTGAC
2789 ATGTGACACGCCACATGTACCAAAAAGT
1 ATGTG-CACGCCACATGTACCAAAAAGT
2817 CGTGCCACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (30 bp):
ATGTGCACGCCACATGTACCAAAAAGTGAC
Found at i:2846 original size:19 final size:20
Alignment explanation
Indices: 2800--2847 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
2790 TGTGACACGC
*
2800 CACATGTACCAAAAAGTCGTGC
1 CACATGTACCAAAAA--CGTGA
2822 CACATGTACCAAAAA-GTGA
1 CACATGTACCAAAAACGTGA
2841 CACATGT
1 CACATGT
2848 CACGCCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CACATGTACCAAAAACGTGA
Found at i:2852 original size:53 final size:53
Alignment explanation
Indices: 2767--2869 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
2757 GATGTGGCAC
* **
2767 GCCACGTGTACCAAAAAGTGACATGTGACACGCCACATGTACCAAAAAGTCGT
1 GCCACATGTACCAAAAAGTGACACATGACACGCCACATGTACCAAAAAGTCGT
* *
2820 GCCACATGTACCAAAAAGTGACACATGTCACGCCACGTGTACCAAAAAGT
1 GCCACATGTACCAAAAAGTGACACATGACACGCCACATGTACCAAAAAGT
2870 GACACGTGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (53 bp):
GCCACATGTACCAAAAAGTGACACATGACACGCCACATGTACCAAAAAGTCGT
Found at i:2897 original size:31 final size:31
Alignment explanation
Indices: 2819--2908 Score: 108
Period size: 31 Copynumber: 2.9 Consensus size: 31
2809 CAAAAAGTCG
* *
2819 TGCCACATGTACCAAAAAGTGACACATGTCA
1 TGCCACATGTACCAAAAAGTGACACGTGGCA
* *
2850 CGCCACGTGTACCAAAAAGTGACACGTGGCA
1 TGCCACATGTACCAAAAAGTGACACGTGGCA
** * *
2881 TGCCACATGTTTCAAAAAATGCCACGTG
1 TGCCACATGTACCAAAAAGTGACACGTG
2909 CACAAAAGGA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (31 bp):
TGCCACATGTACCAAAAAGTGACACGTGGCA
Found at i:3509 original size:22 final size:22
Alignment explanation
Indices: 3484--3568 Score: 134
Period size: 22 Copynumber: 3.9 Consensus size: 22
3474 TCCATGAGGA
* *
3484 GGTTATCAAAATTCCATAGTGT
1 GGTTACCAAAATTTCATAGTGT
3506 GGTTACCAAAATTTCATAGTGT
1 GGTTACCAAAATTTCATAGTGT
* *
3528 AGTTACCAAAATTTCATAGAGT
1 GGTTACCAAAATTTCATAGTGT
3550 GGTTACCAAAATTTCATAG
1 GGTTACCAAAATTTCATAG
3569 GATCAGGTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.34
Consensus pattern (22 bp):
GGTTACCAAAATTTCATAGTGT
Found at i:3620 original size:22 final size:22
Alignment explanation
Indices: 3438--3622 Score: 124
Period size: 22 Copynumber: 8.3 Consensus size: 22
3428 TTGTCTCTAT
* *
3438 GTGGTTATCAAAATTTTATA-A
1 GTGGTTATTAAAATTTCATAGA
* *
3459 GATGGTTATTATAATTCCAT-GA
1 G-TGGTTATTAAAATTTCATAGA
* * * *
3481 GGAGGTTATCAAAATTCCATAGT
1 -GTGGTTATTAAAATTTCATAGA
** *
3504 GTGGTTACCAAAATTTCATAGT
1 GTGGTTATTAAAATTTCATAGA
* **
3526 GTAGTTACCAAAATTTCATAGA
1 GTGGTTATTAAAATTTCATAGA
**
3548 GTGGTTACCAAAATTTCATAG-
1 GTGGTTATTAAAATTTCATAGA
*
3569 GATCAGGTTATTAAAATTTCTTAGA
1 G-T--GGTTATTAAAATTTCATAGA
* * *
3594 TTGGTTATTGAAATTTCATAGG
1 GTGGTTATTAAAATTTCATAGA
3616 GTGGTTA
1 GTGGTTA
3623 ATTATCACAA
Statistics
Matches: 134, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.01
22 113 0.84
23 2 0.01
24 17 0.13
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (22 bp):
GTGGTTATTAAAATTTCATAGA
Found at i:3714 original size:22 final size:22
Alignment explanation
Indices: 3661--3793 Score: 83
Period size: 22 Copynumber: 6.0 Consensus size: 22
3651 AAAAAGATTT
* *
3661 CAAAATGTCATAGCGAGGTTATA
1 CAAAATTTCATAGTGAGGTTA-A
*
3684 CGAAAATTTCATAGTGTGGTTAA
1 C-AAAATTTCATAGTGAGGTTAA
*
3707 CAAAATTTCATTAG-AAGGTT-A
1 CAAAATTTCA-TAGTGAGGTTAA
* * * * *
3728 CTAATACTTCATTGGGAGGTTAT
1 C-AAAATTTCATAGTGAGGTTAA
* * * *
3751 CAAATTTTGATAGTGTGGTTAT
1 CAAAATTTCATAGTGAGGTTAA
3773 CAAAATTTCATA-TGAAGGTTA
1 CAAAATTTCATAGTG-AGGTTA
3794 TAAAAGTCTC
Statistics
Matches: 84, Mismatches: 20, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
21 6 0.07
22 54 0.64
23 7 0.08
24 17 0.20
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (22 bp):
CAAAATTTCATAGTGAGGTTAA
Found at i:3794 original size:22 final size:22
Alignment explanation
Indices: 3676--4045 Score: 100
Period size: 22 Copynumber: 16.8 Consensus size: 22
3666 TGTCATAGCG
3676 AGGTTATACGAAAATTTCATAGTG-
1 AGGTTAT-C-AAAATTTCATA-TGA
* *
3700 TGGTTAACAAAATTTCAT-TAGA
1 AGGTTATCAAAATTTCATAT-GA
* * *
3722 AGGTTA-CTAATACTTCAT-TGGG
1 AGGTTATC-AAAATTTCATAT-GA
* *
3744 AGGTTATCAAATTTTGATAGTG-
1 AGGTTATCAAAATTTCATA-TGA
*
3766 TGGTTATCAAAATTTCATATGA
1 AGGTTATCAAAATTTCATATGA
*
3788 AGGTTAT-AAAAGTCTCAATTTCAT-A
1 AGGTTATCAAAA-TTTC-A--T-ATGA
* * *
3813 AGGAGTACCAAAATTTGATA-GA
1 AGG-TTATCAAAATTTCATATGA
*
3835 AGGTTATC-AAATCTCATA-G-
1 AGGTTATCAAAATTTCATATGA
* *
3854 AGTGATTATCGAAATTTCATAAAGA
1 AG-G-TTATCAAAATTTCAT-ATGA
*
3879 TAGGATTATAAAAATTT-ATA--A
1 -AGG-TTATCAAAATTTCATATGA
*
3900 AGATTATCAAAATTTCATAGTG-
1 AGGTTATCAAAATTTCATA-TGA
** * *
3922 TTGTTATCAAAATTACAAAGTG-
1 AGGTTATCAAAATTTCATA-TGA
*
3944 AGGTTATCAAAATTACATAATG-
1 AGGTTATCAAAATTTCAT-ATGA
* *
3966 TGATTATCAAAATTTCATA-GA
1 AGGTTATCAAAATTTCATATGA
* * *
3987 GGGGTCAACAAAATTT--TAT-A
1 -AGGTTATCAAAATTTCATATGA
* * *
4007 AAGATATCAAAATTTCATA-AA
1 AGGTTATCAAAATTTCATATGA
*
4028 GAGGTTATCAAATTTTCA
1 -AGGTTATCAAAATTTCA
4046 AAATGTGATT
Statistics
Matches: 260, Mismatches: 52, Indels: 70
0.68 0.14 0.18
Matches are distributed among these distances:
19 23 0.09
20 20 0.08
21 21 0.08
22 149 0.57
23 8 0.03
24 9 0.03
25 18 0.07
26 8 0.03
27 4 0.02
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATATGA
Found at i:3929 original size:66 final size:63
Alignment explanation
Indices: 3822--3987 Score: 149
Period size: 66 Copynumber: 2.5 Consensus size: 63
3812 AAGGAGTACC
* * * *
3822 AAAATTTGATAGAAGGTTATC-AAATCTCATAGAGTGATTATCGAAATTTCATAAAGAT-AGGAT
1 AAAATTT-ATA-AAGATTATCAAAATTTCATAGAGTGATTATC-AAAATT-ACAAAG-TGAGG-T
3885 TATA
60 TATA
* *
3889 AAAATTTATAAAGATTATCAAAATTTCATAGTGTTG-TTATCAAAATTACAAAGTGAGGTTATC
1 AAAATTTATAAAGATTATCAAAATTTCATAGAG-TGATTATCAAAATTACAAAGTGAGGTTATA
* *
3952 AAAATTACATAATGTGATTATCAAAATTTCATAGAG
1 AAAATT-TATAA--AGATTATCAAAATTTCATAGAG
3988 GGGTCAACAA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
63 11 0.13
64 12 0.14
65 13 0.15
66 39 0.46
67 9 0.11
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (63 bp):
AAAATTTATAAAGATTATCAAAATTTCATAGAGTGATTATCAAAATTACAAAGTGAGGTTATA
Found at i:3999 original size:44 final size:44
Alignment explanation
Indices: 3838--4070 Score: 178
Period size: 44 Copynumber: 5.4 Consensus size: 44
3828 TGATAGAAGG
* * * * *
3838 TTATC-AAATCTCATAGAGTGATTATCGAAATTTCATAAAGATAGGA
1 TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATG-T--GA
* * *
3884 TTATAAAAATTT-ATA-A-AGATTATCAAAATTTCATAGTGTTG-
1 TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATG-TGA
* * * *
3925 TTATCAAAATTACAAAGTGAGGTTATCAAAATTACATAATGTGA
1 TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATGTGA
* * * * *
3969 TTATCAAAATTTCATAGAGGGGTCAACAAAATTTTATAA--AGA
1 TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATGTGA
* * *
4011 -TATCAAAATTTCATAAAGAGGTTATCAAATTTTCAAAATGTGA
1 TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATGTGA
4054 TTA-CAAAAGTTTCATAG
1 TTATCAAAA-TTTCATAG
4071 TGGTATTTCT
Statistics
Matches: 146, Mismatches: 32, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
41 41 0.28
42 5 0.03
43 9 0.06
44 78 0.53
45 1 0.01
46 7 0.05
47 5 0.03
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (44 bp):
TTATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAATGTGA
Found at i:4181 original size:19 final size:19
Alignment explanation
Indices: 4151--4217 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
4141 TAATGGAGTA
4151 ATCAAAATTTCAGGGAGGAT
1 ATCAAAA-TTCAGGGAGGAT
*
4171 ACCAAAATTCAGGGAGGAT
1 ATCAAAATTCAGGGAGGAT
* **
4190 ATCGAAATTCAATGAGGAT
1 ATCAAAATTCAGGGAGGAT
4209 ATCAAAATT
1 ATCAAAATT
4218 TCATATGAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 35 0.85
20 6 0.15
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (19 bp):
ATCAAAATTCAGGGAGGAT
Found at i:4234 original size:22 final size:22
Alignment explanation
Indices: 4208--4745 Score: 157
Period size: 22 Copynumber: 24.7 Consensus size: 22
4198 TCAATGAGGA
4208 TATCAAAATTTCATATGAAGGT
1 TATCAAAATTTCATATGAAGGT
* **
4230 TATCAAATTTTCATAGTTTA-GT
1 TATCAAAATTTCATA-TGAAGGT
* * *
4252 TTTCAAAATTTCATAAGAGGGT
1 TATCAAAATTTCATATGAAGGT
* * *
4274 TATCAAAATTTCATAGGGAGAT
1 TATCAAAATTTCATATGAAGGT
*
4296 TAACAAAATTTCATAATG-AGGT
1 TATCAAAATTTCAT-ATGAAGGT
* ** * * *
4318 AATCAAAAAATCATAGGGAGCT
1 TATCAAAATTTCATATGAAGGT
*
4340 TATCAAAA--T--T-TGTA-GT
1 TATCAAAATTTCATATGAAGGT
* * *
4356 TATCAAGATTTCATAAGAAAGT
1 TATCAAAATTTCATATGAAGGT
* * *
4378 TATCAAAATTTTATAGGGAGGTT
1 TATCAAAATTTCATATGAAGG-T
* * * *
4401 TATTAAAATTTTATAGGAAGATT
1 TATCAAAATTTCATATGAAG-GT
* *
4424 TATCAAAATTTTATA-GCGAGGT
1 TATCAAAATTTCATATG-AAGGT
* * *
4446 TATCACAATTTCATAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
*
4468 TATCAAAACTTTAAAGTATG-A--T
1 TATCAAAA-TTT-CA-TATGAAGGT
* * *
4490 TACTTACAA-TTCATATGGAGGT
1 TA-TCAAAATTTCATATGAAGGT
** * *
4512 T-TTTAAATTT-TTATAAAGTGGT
1 TATCAAAATTTCATATGAA--GGT
* * *
4534 TATCAATATATCATATGGAGGT
1 TATCAAAATTTCATATGAAGGT
* * **
4556 TATCAACATCTCATAGTGTTGGT
1 TATCAAAATTTCATA-TGAAGGT
*
4579 TATCAAAATTTCAT-TGGAAAGT
1 TATCAAAATTTCATAT-GAAGGT
4601 TATCAAAATTTCATATTG-AGGT
1 TATCAAAATTTCATA-TGAAGGT
* * * *
4623 CT-TCAAAATTCCTTAAGGAGGT
1 -TATCAAAATTTCATATGAAGGT
* * *
4645 TAACAAAATTTCATAAGAAAGT
1 TATCAAAATTTCATATGAAGGT
* * ** *
4667 TA-AAAAAATT-ATAAAAAGAT
1 TATCAAAATTTCATATGAAGGT
* ** * **
4687 TCTTGAAATTCCATA-GTATCGT
1 TATCAAAATTTCATATG-AAGGT
* *
4709 TATTAAAATTTCATAGGAAGGT
1 TATCAAAATTTCATATGAAGGT
4731 TATCAAAATTTCATA
1 TATCAAAATTTCATA
4746 ATGGGATCAT
Statistics
Matches: 377, Mismatches: 101, Indels: 76
0.68 0.18 0.14
Matches are distributed among these distances:
16 8 0.02
17 2 0.01
18 2 0.01
19 4 0.01
20 20 0.05
21 21 0.06
22 237 0.63
23 72 0.19
24 9 0.02
25 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (22 bp):
TATCAAAATTTCATATGAAGGT
Found at i:4303 original size:44 final size:42
Alignment explanation
Indices: 4208--4662 Score: 201
Period size: 44 Copynumber: 10.4 Consensus size: 42
4198 TCAATGAGGA
* * **
4208 TATCAAAATTTCATATGAAGGTTATCAAATTTTCATAGTTTAGT
1 TATCAAAATTTCATAAG-AGGTTATCAAAATTTCATAG-GGAGT
*
4252 TTTCAAAATTTCATAAGAGGGTTATCAAAATTTCATAGGGAGAT
1 TATCAAAATTTCATAAGA-GGTTATCAAAATTTCATAGGGAG-T
* * **
4296 TAACAAAATTTCATAATGAGGTAATCAAAAAATCATAGGGAGCT
1 TATCAAAATTTCATAA-GAGGTTATCAAAATTTCATAGGGAG-T
* * **
4340 TATCAAAATTT-GT---A-GTTATCAAGATTTCATAAGAAAGT
1 TATCAAAATTTCATAAGAGGTTATCAAAATTTCAT-AGGGAGT
* * * * *
4378 TATCAAAATTTTATAGGGAGGTTTATTAAAATTTTATAGGAAGATT
1 TATCAAAATTTCATA-AGAGG-TTATCAAAATTTCATAGG--GAGT
* * *
4424 TATCAAAATTTTATAGCGAGGTTATCACAATTTCATAGTGTGA-T
1 TATCAAAATTTCATA-AGAGGTTATCAAAATTTCATAG-G-GAGT
* * * *
4468 TATCAAAACTTT-A-AAGTATGATTACTTACAA-TTCATATGGAGGT
1 TATCAAAA-TTTCATAAG-A-GGTTA-TCAAAATTTCATAGGGA-GT
* * * * * * * *
4512 TTTTAAATTTTTATAAAGTGGTTATCAATATATCATATGGAGGT
1 TATCAAAATTTCAT-AAGAGGTTATCAAAATTTCATAGGGA-GT
* * * * * *
4556 TATCAACATCTCATAGTGTTGGTTATCAAAATTTCATTGGAAAGT
1 TATCAAAATTTCATA-AG-AGGTTATCAAAATTTCATAGG-GAGT
* * * *
4601 TATCAAAATTTCATATTGAGGTCT-TCAAAATTCCTTAAGGAGGT
1 TATCAAAATTTCATA-AGAGGT-TATCAAAATTTCATAGGGA-GT
*
4645 TAACAAAATTTCATAAGA
1 TATCAAAATTTCATAAGA
4663 AAGTTAAAAA
Statistics
Matches: 315, Mismatches: 67, Indels: 59
0.71 0.15 0.13
Matches are distributed among these distances:
38 24 0.08
39 6 0.02
42 3 0.01
43 18 0.06
44 164 0.52
45 73 0.23
46 27 0.09
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (42 bp):
TATCAAAATTTCATAAGAGGTTATCAAAATTTCATAGGGAGT
Found at i:4408 original size:23 final size:23
Alignment explanation
Indices: 4377--4461 Score: 109
Period size: 23 Copynumber: 3.7 Consensus size: 23
4367 CATAAGAAAG
4377 TTATCAAAATTTTATAGGGAGGT
1 TTATCAAAATTTTATAGGGAGGT
* * *
4400 TTATTAAAATTTTATAGGAAGAT
1 TTATCAAAATTTTATAGGGAGGT
*
4423 TTATCAAAATTTTATAGCGAGG-
1 TTATCAAAATTTTATAGGGAGGT
* *
4445 TTATCACAATTTCATAG
1 TTATCAAAATTTTATAG
4462 TGTGATTATC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 15 0.28
23 38 0.72
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (23 bp):
TTATCAAAATTTTATAGGGAGGT
Found at i:4603 original size:45 final size:45
Alignment explanation
Indices: 4530--4615 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
4520 TTTTATAAAG
* * *
4530 TGGTTATCAATATATCATATGGAGGTTATCAACATCTCATAGTGT
1 TGGTTATCAAAATATCATATGGAAGTTATCAAAATCTCATAGTGT
* *
4575 TGGTTATCAAAATTTCAT-TGGAAAGTTATCAAAATTTCATA
1 TGGTTATCAAAATATCATATGG-AAGTTATCAAAATCTCATA
4616 TTGAGGTCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.09
45 32 0.91
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (45 bp):
TGGTTATCAAAATATCATATGGAAGTTATCAAAATCTCATAGTGT
Found at i:5916 original size:45 final size:45
Alignment explanation
Indices: 5865--5954 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
5855 GATTATTTCT
*
5865 CCAGCTCATCATTAATCCTGGGTAGGGATCTTTTAATAATTCCAC
1 CCAGCTCATCATTAATCCTAGGTAGGGATCTTTTAATAATTCCAC
* *
5910 CCAGCTCATCATTAATTCTAGGTAGGGATCTTTTAGTAATTCCAC
1 CCAGCTCATCATTAATCCTAGGTAGGGATCTTTTAATAATTCCAC
5955 TACTCTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (45 bp):
CCAGCTCATCATTAATCCTAGGTAGGGATCTTTTAATAATTCCAC
Found at i:6868 original size:6 final size:6
Alignment explanation
Indices: 6835--6889 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
6825 TAACCGACTG
** *
6835 ATTTAT A-TTAT ATAAAT ATATAT AATTTAT ATTTAT ATTTAT ATTTAT
1 ATTTAT ATTTAT ATTTAT ATTTAT -ATTTAT ATTTAT ATTTAT ATTTAT
*
6883 ATATAT A
1 ATTTAT A
6890 ATATTTATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
5 5 0.12
6 32 0.76
7 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTAT
Found at i:8442 original size:14 final size:14
Alignment explanation
Indices: 8423--8454 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8413 ATGATTAAGT
*
8423 TGAAATATGGATTC
1 TGAAATATGCATTC
8437 TGAAATATGCATTC
1 TGAAATATGCATTC
8451 TGAA
1 TGAA
8455 TTCTGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (14 bp):
TGAAATATGCATTC
Found at i:8561 original size:14 final size:14
Alignment explanation
Indices: 8542--8573 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8532 GTCATGTGTG
*
8542 TTCTAAATTCTGAT
1 TTCTAAATTCTGAA
8556 TTCTAAATTCTGAA
1 TTCTAAATTCTGAA
8570 TTCT
1 TTCT
8574 TAATATGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50
Consensus pattern (14 bp):
TTCTAAATTCTGAA
Found at i:11163 original size:16 final size:16
Alignment explanation
Indices: 11142--11172 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11132 TTGGGTTCTG
11142 AATTCTGAAATTTGTA
1 AATTCTGAAATTTGTA
*
11158 AATTCTGATATTTGT
1 AATTCTGAAATTTGT
11173 GATTTGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (16 bp):
AATTCTGAAATTTGTA
Found at i:11163 original size:23 final size:22
Alignment explanation
Indices: 11137--11194 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
11127 TCTGATTGGG
11137 TTCTGAATTCTGAAATTTGTAAA
1 TTCTGAATT-TGAAATTTGTAAA
** *
11160 TTCTGATATTTGTGATTTGTGAA
1 TTCTGA-ATTTGAAATTTGTAAA
11183 TTCTGAAATTTG
1 TTCTG-AATTTG
11195 TTGTGACTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 26 0.87
24 4 0.13
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.48
Consensus pattern (22 bp):
TTCTGAATTTGAAATTTGTAAA
Found at i:11195 original size:23 final size:23
Alignment explanation
Indices: 11151--11195 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
11141 GAATTCTGAA
*
11151 ATTTGTAAATTCTGATATTTGTG
1 ATTTGTAAATTCTGAAATTTGTG
*
11174 ATTTGTGAATTCTGAAATTTGT
1 ATTTGTAAATTCTGAAATTTGT
11196 TGTGACTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (23 bp):
ATTTGTAAATTCTGAAATTTGTG
Found at i:11239 original size:8 final size:8
Alignment explanation
Indices: 11217--11250 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
11207 AAGTTTGTTT
11217 ATTCTG-A
1 ATTCTGAA
*
11224 ATTTTGAA
1 ATTCTGAA
11232 ATTCTGAA
1 ATTCTGAA
11240 ATTCTGAA
1 ATTCTGAA
11248 ATT
1 ATT
11251 TGTCTATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 5 0.21
8 19 0.79
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (8 bp):
ATTCTGAA
Found at i:11507 original size:33 final size:33
Alignment explanation
Indices: 11470--11538 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
11460 GTTTTTGCCT
11470 ATTTGGTCTATTTCTTTTCTGCCTTTTTAGATG
1 ATTTGGTCTATTTCTTTTCTGCCTTTTTAGATG
11503 ATTTGGTCTATTTCTTTTCTGCCTTTTTAGATG
1 ATTTGGTCTATTTCTTTTCTGCCTTTTTAGATG
11536 ATT
1 ATT
11539 GCTGCTGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.13, C:0.14, G:0.14, T:0.58
Consensus pattern (33 bp):
ATTTGGTCTATTTCTTTTCTGCCTTTTTAGATG
Found at i:13833 original size:1 final size:1
Alignment explanation
Indices: 13827--13882 Score: 103
Period size: 1 Copynumber: 56.0 Consensus size: 1
13817 GCAAAAGTTT
*
13827 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13883 CTACATGAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.98, C:0.00, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:15453 original size:30 final size:29
Alignment explanation
Indices: 15386--15460 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
15376 TTGTAGTGTT
* *
15386 TAGACGTTTTGCCCCATGAACTTCAATTA
1 TAGACATTTTGCCCCCTGAACTTCAATTA
* *
15415 TGGACATTTTGCCCCCTGAACTTCAATTT
1 TAGACATTTTGCCCCCTGAACTTCAATTA
15444 TCAGACATTTTGCCCCC
1 T-AGACATTTTGCCCCC
15461 CAACCTAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (29 bp):
TAGACATTTTGCCCCCTGAACTTCAATTA
Found at i:15666 original size:30 final size:30
Alignment explanation
Indices: 15602--15704 Score: 99
Period size: 30 Copynumber: 3.5 Consensus size: 30
15592 AGGTTGAGGG
* * *
15602 GGCAAAACGTCCGAAAATTGAAATTC-AGTG
1 GGCAAAACGTCCAAAAATTGAAGTTCAAG-A
15632 GGCAAAACGTCCAAAAATTGAAGTTCAAGA
1 GGCAAAACGTCCAAAAATTGAAGTTCAAGA
*
15662 GGC-AAACTGTTC-AAAATTGAAGTTCATAGA
1 GGCAAAAC-GTCCAAAAATTGAAGTTCA-AGA
*
15692 --CAAAACGTTCAAA
1 GGCAAAACGTCCAAA
15705 CGCTAGAAGT
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.08
29 24 0.38
30 33 0.52
31 2 0.03
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (30 bp):
GGCAAAACGTCCAAAAATTGAAGTTCAAGA
Found at i:15697 original size:29 final size:27
Alignment explanation
Indices: 15636--15704 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
15626 TCAGTGGGCA
*
15636 AAACGTCCAAAAATTGAAGTTCAAGAGGC
1 AAACGTTC-AAAATTGAAGTTCAAGA-GC
15665 AAACTGTTCAAAATTGAAGTTCATAGA-C
1 AAAC-GTTCAAAATTGAAGTTCA-AGAGC
15693 AAAACGTTCAAA
1 -AAACGTTCAAA
15705 CGCTAGAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
28 8 0.22
29 22 0.61
30 6 0.17
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (27 bp):
AAACGTTCAAAATTGAAGTTCAAGAGC
Found at i:23292 original size:22 final size:23
Alignment explanation
Indices: 23240--23407 Score: 129
Period size: 22 Copynumber: 7.6 Consensus size: 23
23230 TAAGGAGTAC
* *
23240 CAAAATTTGATAGA-A-GGTTAT
1 CAAAATTTCATAGAGATGATTAT
*
23261 C-AAATCTCATAGAG-TGATTAT
1 CAAAATTTCATAGAGATGATTAT
*
23282 CGAAATTTCATAGAGATCAGATTAT
1 CAAAATTTCATAGAGAT--GATTAT
*
23307 CAAAATTT-ATAGA-AAGATTAT
1 CAAAATTTCATAGAGATGATTAT
* *
23328 CAAAATTTCATAGTGTTG-TTAT
1 CAAAATTTCATAGAGATGATTAT
* * * *
23350 CAAAATTTCAAAGCGAAGGTTAT
1 CAAAATTTCATAGAGATGATTAT
*
23373 CAAAATTACATA-ATG-TGATTAT
1 CAAAATTTCATAGA-GATGATTAT
*
23395 CAGAATTTCATAG
1 CAAAATTTCATAG
23408 TGGTCAACAA
Statistics
Matches: 116, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
20 10 0.09
21 21 0.18
22 49 0.42
23 18 0.16
24 5 0.04
25 13 0.11
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (23 bp):
CAAAATTTCATAGAGATGATTAT
Found at i:23395 original size:45 final size:45
Alignment explanation
Indices: 23301--23404 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
23291 ATAGAGATCA
* * *
23301 GATTATCAAAATTT-ATAGAAAGATTATCAAAATTTCATAGTGTT
1 GATTATCAAAATTTCAAAGAAAGATTATCAAAATTACATAATGTT
* *
23345 G-TTATCAAAATTTCAAAGCGAAGGTTATCAAAATTACATAATG-T
1 GATTATCAAAATTTCAAAG-AAAGATTATCAAAATTACATAATGTT
*
23389 GATTATCAGAATTTCA
1 GATTATCAAAATTTCA
23405 TAGTGGTCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
43 12 0.24
44 6 0.12
45 33 0.65
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (45 bp):
GATTATCAAAATTTCAAAGAAAGATTATCAAAATTACATAATGTT
Found at i:23444 original size:22 final size:20
Alignment explanation
Indices: 23419--23465 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
23409 GGTCAACAAG
23419 ATTTTATAAAGAGGTTATCAAA
1 ATTTTAT-AAGAGGTTATC-AA
*
23441 ATTTCATAAGAGGTTATCAA
1 ATTTTATAAGAGGTTATCAA
23461 ATTTT
1 ATTTT
23466 CAAAATGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 11 0.48
22 6 0.26
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (20 bp):
ATTTTATAAGAGGTTATCAA
Found at i:23453 original size:21 final size:21
Alignment explanation
Indices: 23223--23467 Score: 121
Period size: 22 Copynumber: 11.3 Consensus size: 21
23213 TAAAAGTCTC
*
23223 AATTTCATAAG-GAG-TACCAA
1 AATTTCATAAGAG-GTTATCAA
*
23243 AATTTGAT-AGAAGGTTATC-A
1 AATTTCATAAG-AGGTTATCAA
* *
23263 AATCTCAT-AGAGTGATTATCGA
1 AATTTCATAAGAG-G-TTATCAA
*
23285 AATTTCATAGAGATCAGATTATCAA
1 AATTTCATA-AG---AGGTTATCAA
* *
23310 AATTT-ATAGAAAGATTATCAA
1 AATTTCATA-AGAGGTTATCAA
*
23331 AATTTCAT-AGTGTTGTTATCAA
1 AATTTCATAAGAG--GTTATCAA
23353 AATTTCA-AAGCGAAGGTTATCAA
1 AATTTCATAA--G-AGGTTATCAA
* * * *
23376 AATTACATAATGTGATTATCAG
1 AATTTCATAA-GAGGTTATCAA
* * *
23398 AATTTCAT-AGTGGTCAACAA
1 AATTTCATAAGAGGTTATCAA
* *
23418 GATTTTATAAAGAGGTTATCAA
1 AATTTCAT-AAGAGGTTATCAA
23440 AATTTCATAAGAGGTTATCAA
1 AATTTCATAAGAGGTTATCAA
*
23461 ATTTTCA
1 AATTTCA
23468 AAATGTGATT
Statistics
Matches: 174, Mismatches: 30, Indels: 41
0.71 0.12 0.17
Matches are distributed among these distances:
19 4 0.02
20 33 0.19
21 44 0.25
22 54 0.31
23 15 0.09
24 10 0.06
25 12 0.07
27 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (21 bp):
AATTTCATAAGAGGTTATCAA
Found at i:23465 original size:42 final size:42
Alignment explanation
Indices: 23345--23465 Score: 102
Period size: 42 Copynumber: 2.8 Consensus size: 42
23335 TCATAGTGTT
** * *
23345 GTTATCAAAATTTCA-AAGCGAAGGTTATCAAAATTACATAATGTG
1 GTTATCAAAATTTCATAA--G-AGGTTATC-AAATTTTATAAAGAG
* * * * *
23390 ATTATCAGAATTTCAT-AGTGGTCAACAAGATTTTATAAAGAG
1 GTTATCAAAATTTCATAAGAGGTTATCAA-ATTTTATAAAGAG
23432 GTTATCAAAATTTCATAAGAGGTTATCAAATTTT
1 GTTATCAAAATTTCATAAGAGGTTATCAAATTTT
23466 CAAAATGTGA
Statistics
Matches: 59, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
41 2 0.03
42 33 0.56
43 10 0.17
45 14 0.24
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (42 bp):
GTTATCAAAATTTCATAAGAGGTTATCAAATTTTATAAAGAG
Found at i:23709 original size:44 final size:43
Alignment explanation
Indices: 23615--23710 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 43
23605 ACTTTAGTTT
**
23615 TTAAAATTTCATATGAGGGTTATCAAAATTTCATAGGGAGAGTA
1 TTAAAA-TTCATATGAGGGTTATCAAAAAATCATAGGGAGAGTA
**
23659 ACAAAATTCAATAATGA-GGTTATCAAAAAATCATAGGGAG-GTTA
1 TTAAAATTC-AT-ATGAGGGTTATCAAAAAATCATAGGGAGAG-TA
23703 TTAAAATT
1 TTAAAATT
23711 TGTAGTTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.09
44 35 0.81
45 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (43 bp):
TTAAAATTCATATGAGGGTTATCAAAAAATCATAGGGAGAGTA
Found at i:23767 original size:25 final size:25
Alignment explanation
Indices: 23739--23802 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
23729 ATAAGAAAGT
* *
23739 TATCAAAATTTTATAGGGAGTTTTA
1 TATCAAAATTTTATAGGAAGATTTA
23764 TATCAAAATTTTATAGGAAGATTTA
1 TATCAAAATTTTATAGGAAGATTTA
*
23789 T-T-AAAATTTCATAG
1 TATCAAAATTTTATAG
23803 CGAGGTTATC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 11 0.31
24 1 0.03
25 24 0.67
ACGTcount: A:0.41, C:0.05, G:0.12, T:0.42
Consensus pattern (25 bp):
TATCAAAATTTTATAGGAAGATTTA
Found at i:23802 original size:23 final size:23
Alignment explanation
Indices: 23724--23802 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 23
23714 AGTTTTCAAG
* * *
23724 ATTTCATAAGAA-AGTTATCAAA
1 ATTTCATAGGAAGATTTATTAAA
* * *
23746 ATTTTATAGGGAGTTTTATATCAAA
1 ATTTCATAGGAAGATTTAT-T-AAA
*
23771 ATTTTATAGGAAGATTTATTAAA
1 ATTTCATAGGAAGATTTATTAAA
23794 ATTTCATAG
1 ATTTCATAG
23803 CGAGGTTATC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
22 9 0.20
23 15 0.33
24 1 0.02
25 20 0.44
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.41
Consensus pattern (23 bp):
ATTTCATAGGAAGATTTATTAAA
Found at i:23818 original size:22 final size:22
Alignment explanation
Indices: 23764--23843 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
23754 GGGAGTTTTA
*
23764 TATCAAAATTTTATAG-GAAGATT
1 TATCAAAATTTCATAGCG-AGA-T
* *
23787 TATTAAAATTTCATAGCGAGGT
1 TATCAAAATTTCATAGCGAGAT
* * *
23809 TATCACAATTTCATAGTGTGAT
1 TATCAAAATTTCATAGCGAGAT
23831 TATCAAAATTTCA
1 TATCAAAATTTCA
23844 GAGTGTGATT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 30 0.64
23 16 0.34
24 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (22 bp):
TATCAAAATTTCATAGCGAGAT
Found at i:23848 original size:22 final size:22
Alignment explanation
Indices: 23808--23854 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
23798 CATAGCGAGG
* *
23808 TTATCACAATTTCATAGTGTGA
1 TTATCAAAATTTCAGAGTGTGA
23830 TTATCAAAATTTCAGAGTGTGA
1 TTATCAAAATTTCAGAGTGTGA
23852 TTA
1 TTA
23855 CTAACAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTATCAAAATTTCAGAGTGTGA
Found at i:23865 original size:22 final size:23
Alignment explanation
Indices: 23808--23863 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
23798 CATAGCGAGG
*
23808 TTATC-ACAATTTCATAGTGTGA
1 TTATCAACAATTTCAGAGTGTGA
23830 TTATCAA-AATTTCAGAGTGTGA
1 TTATCAACAATTTCAGAGTGTGA
23852 TTA-CTAACAATT
1 TTATC-AACAATT
23864 CATATGGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 24 0.80
23 5 0.17
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (23 bp):
TTATCAACAATTTCAGAGTGTGA
Found at i:23967 original size:45 final size:45
Alignment explanation
Indices: 23893--23978 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
23883 TTTCATAACG
* * *
23893 TGGTTATCAATATATCATATGGAAGTTATCAACATCTCATAGTGT
1 TGGTTATCAAAATATCATATGGAAATTATCAAAATCTCATAGTGT
* *
23938 TGGTTATCAAAATTTCAT-TGGGAAATTATCAAAATTTCATA
1 TGGTTATCAAAATATCATAT-GGAAATTATCAAAATCTCATA
23979 TTGAGGTCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 1 0.03
45 34 0.97
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (45 bp):
TGGTTATCAAAATATCATATGGAAATTATCAAAATCTCATAGTGT
Found at i:24042 original size:19 final size:19
Alignment explanation
Indices: 24004--24042 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23994 TTCCTTAGGG
*
24004 AGGTTAACAAAATTTCATA
1 AGGTTAAAAAAATTTCATA
24023 AGGTTAAAAAACATTT-ATA
1 AGGTTAAAAAA-ATTTCATA
24042 A
1 A
24043 AAAGGTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (19 bp):
AGGTTAAAAAAATTTCATA
Done.