Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011143.1 Corchorus capsularis cultivar CVL-1 contig11164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50961

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93--130
15
2.4
16
82
4
51
57
2
23
15
1.51
8052--8382
164
2.0
164
100
0
662
28
16
18
36
1.93
11544--11570
14
1.9
14
100
0
54
44
3
7
44
1.49
13768--13819
21
2.5
21
83
0
68
17
50
7
25
1.72
13794--13847
27
2.0
27
88
0
81
16
55
3
24
1.57
14800--14827
3
9.3
3
100
0
56
67
0
0
32
0.91
24654--25007
175
2.0
175
100
0
708
35
12
16
34
1.88
36108--36285
54
3.2
54
93
4
286
16
6
49
26
1.71
38958--38985
4
7.0
4
100
0
56
50
0
0
50
1.00
40187--40245
18
3.3
18
74
9
66
6
38
22
32
1.80
40205--40309
30
3.7
30
80
14
141
7
34
22
35
1.83
40214--40273
18
3.7
18
70
25
69
10
33
21
35
1.87
40217--40296
24
3.1
24
79
19
97
7
32
23
36
1.83
40617--40652
6
6.0
6
100
0
72
83
0
16
0
0.65
43350--43766
226
1.8
226
96
0
780
28
17
17
35
1.94
45614--45676
30
2.1
30
90
0
99
11
30
20
38
1.87
45632--45718
36
2.4
36
88
0
120
6
29
24
39
1.81
45659--45718
18
3.3
18
80
0
75
5
28
26
40
1.77
45653--45724
12
6.0
12
73
0
54
5
30
25
38
1.78
45668--45724
6
9.5
6
82
0
69
3
29
28
38
1.73
47178--47324
73
2.0
73
100
0
294
44
13
5
36
1.67
48853--48894
21
2.0
21
90
0
66
28
0
42
28
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48872--48951
42
1.9
42
92
0
133
27
2
47
22
1.64
48826--48981
63
2.3
65
84
9
199
26
1
47
24
1.62
48914--49011
30
3.3
30
94
0
169
31
1
42
24
1.61
49037--49128
24
4.0
24
78
8
100
13
32
17
36
1.88
50180--50236
31
1.9
30
86
10
82
40
15
21
22
1.91

Tables:   1

The End!