Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011144.1 Corchorus capsularis cultivar CVL-1 contig11165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84321

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52--126
30
2.5
30
80
6
80
26
16
28
29
1.96
297--371
29
2.5
28
85
8
78
25
21
18
34
1.96
294--374
31
2.7
30
84
9
103
23
20
17
38
1.93
2299--2421
11
11.8
11
72
10
71
43
2
0
53
1.13
6140--6340
6
35.5
6
71
21
132
5
28
27
37
1.80
6167--6309
21
6.8
21
86
0
187
6
29
25
37
1.82
6137--6336
27
7.3
27
81
9
235
6
30
26
37
1.82
6293--6340
21
2.4
21
86
10
66
2
29
31
37
1.69
10363--10388
1
26.0
1
100
0
52
100
0
0
0
0.00
12361--12565
103
2.0
101
91
1
329
37
23
10
28
1.87
12543--12593
23
2.2
23
100
0
102
52
21
3
21
1.62
20675--20723
27
1.9
25
88
12
73
42
4
16
36
1.67
21347--21420
38
1.9
38
97
0
139
27
9
17
45
1.79
21396--21497
51
2.0
51
98
0
195
30
23
13
32
1.93
23322--23410
43
2.1
43
100
0
178
48
13
16
21
1.81
40903--40941
18
2.2
18
90
4
62
71
0
23
5
1.05
53059--53215
74
2.1
74
84
2
199
24
26
7
41
1.82
82722--82764
17
2.9
14
75
18
50
51
11
13
23
1.74
83523--83553
16
1.9
16
93
0
53
61
9
12
16
1.56
84010--84099
2
44.5
2
76
12
51
44
4
3
47
1.39
84245--84297
18
2.9
18
97
0
97
11
16
35
35
1.85

Tables:   1

The End!