Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011149.1 Corchorus capsularis cultivar CVL-1 contig11170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12466
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:837 original size:3 final size:3

Alignment explanation


    Indices: 829--865  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        819 TCTCATGTTT

                                                             
        829 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

        866 ATATATATAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Found at i:4412 original size:4 final size:4

Alignment explanation


    Indices: 4403--4428  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

       4393 TTTTAAAATT

                                            
       4403 TTAA TTAA TTAA TTAA TTAA TTAA TT
          1 TTAA TTAA TTAA TTAA TTAA TTAA TT

       4429 CTTTAATCCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (4 bp):   
TTAA

Done.