Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011150.1 Corchorus capsularis cultivar CVL-1 contig11171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112028

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1274--1316
18
2.4
18
85
11
54
34
4
51
9
1.55
7220--7272
27
2.0
27
85
3
72
56
11
9
22
1.63
8982--9123
32
4.5
32
78
8
148
30
35
22
11
1.90
9085--9121
7
5.0
7
87
12
56
27
40
27
5
1.78
8982--9123
16
9.0
16
72
20
102
30
35
22
11
1.90
9093--9132
16
2.5
16
87
0
53
32
35
22
10
1.87
10056--10137
42
2.0
42
92
0
137
37
20
4
36
1.74
10353--10450
16
6.2
16
70
17
62
36
34
19
9
1.84
27170--27208
1
39.0
1
100
0
78
0
0
0
100
0.00
29810--29857
20
2.3
22
78
7
55
54
10
2
33
1.46
35650--35683
10
3.3
10
87
4
50
76
5
17
0
0.98
48940--49061
62
1.9
64
88
6
187
31
13
13
41
1.83
52878--52995
15
7.9
15
81
0
83
13
6
63
16
1.49
52866--52987
30
4.1
30
77
6
113
11
6
63
18
1.49
52866--52987
60
2.0
60
83
0
154
11
6
63
18
1.49
52878--52984
45
2.4
45
76
3
117
12
7
62
17
1.51
66433--66457
13
1.9
13
100
0
50
36
16
16
32
1.90
67299--67348
23
2.2
23
85
7
66
46
8
10
36
1.67
69127--69165
18
2.1
19
85
4
53
71
12
10
5
1.28
78524--78566
21
2.0
21
86
0
59
37
4
16
41
1.69
90542--90573
17
1.9
16
93
6
55
3
25
3
68
1.18
90647--90681
14
2.5
14
90
0
52
2
22
0
74
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107102--107183
43
1.9
43
84
0
110
17
13
21
47
1.81
110773--110801
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!