Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011152.1 Corchorus capsularis cultivar CVL-1 contig11173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14569
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:4452 original size:7 final size:7

Alignment explanation


    Indices: 4440--4477  Score: 76
    Period size: 7  Copynumber: 5.4  Consensus size: 7

       4430 CAATGAGGCT

                   
       4440 ATCCCAA
          1 ATCCCAA

                   
       4447 ATCCCAA
          1 ATCCCAA

                   
       4454 ATCCCAA
          1 ATCCCAA

                   
       4461 ATCCCAA
          1 ATCCCAA

                   
       4468 ATCCCAA
          1 ATCCCAA

               
       4475 ATC
          1 ATC

       4478 TATTGACTAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   31  1.00

ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16


Consensus pattern (7 bp):   
ATCCCAA

Found at i:6613 original size:45 final size:46

Alignment explanation


    Indices: 6449--6619  Score: 310
    Period size: 46  Copynumber: 3.8  Consensus size: 46

       6439 CGAGGTGCCT

                               *                          
       6449 AAGGCTAA-CCATCACGGGTGATGGTGGCCGAGGTGCCCAAGGGGC
          1 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC

                                                          
       6494 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC
          1 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC

                                                          
       6540 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC
          1 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC

                                         *     
       6586 AAGGCTAA-CCATCACGGGCGATGGTGGCTGAGGT
          1 AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGT

       6620 CAAAATTATC


Statistics
Matches: 123,  Mismatches: 2, Indels: 2
        0.97            0.02        0.02

Matches are distributed among these distances:
  45   33  0.27
  46   90  0.73

ACGTcount: A:0.22, C:0.26, G:0.39, T:0.13


Consensus pattern (46 bp):   
AAGGCTAACCCATCACGGGCGATGGTGGCCGAGGTGCCCAAGGGGC
Done.