Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011155.1 Corchorus capsularis cultivar CVL-1 contig11176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93206

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3241--3277
4
9.2
4
93
0
65
45
0
24
29
1.53
16293--16336
21
2.1
21
91
0
70
25
15
20
38
1.92
24729--24789
30
2.1
30
90
3
97
59
18
4
18
1.55
26394--26431
17
2.3
16
95
4
67
21
15
23
39
1.92
26394--26431
8
4.6
8
93
6
67
21
15
23
39
1.92
28598--28624
6
4.5
6
100
0
54
14
14
33
37
1.88
29117--29150
16
2.1
16
100
0
68
47
17
23
11
1.81
31217--31267
5
10.0
5
85
12
68
84
15
0
0
0.63
31357--31498
65
2.1
67
93
2
243
49
16
20
14
1.79
32252--32286
16
2.1
17
94
5
63
48
17
22
11
1.79
60009--60056
22
2.3
21
83
13
64
39
22
16
20
1.92
61488--61512
5
5.0
5
100
0
50
20
20
20
40
1.92
75382--75412
15
2.1
15
100
0
62
48
25
0
25
1.52
76261--76295
1
35.0
1
94
0
61
2
0
0
97
0.19
85626--85653
13
2.2
13
100
0
56
32
14
14
39
1.86
87149--87199
2
26.0
2
86
11
70
50
1
0
47
1.12

Tables:   1

The End!