Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011156.1 Corchorus capsularis cultivar CVL-1 contig11177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68985

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623--760
31
4.5
31
84
0
141
16
21
26
35
1.95
2260--2324
15
4.5
15
75
11
64
24
16
35
23
1.95
19296--19346
17
3.1
16
80
8
57
25
21
17
35
1.95
20555--20588
2
17.5
2
90
6
52
47
0
0
52
1.00
23259--23296
19
2.1
19
85
9
53
2
18
2
76
1.02
27716--27742
1
27.0
1
100
0
54
0
0
0
100
0.00
30335--30361
2
13.5
2
100
0
54
48
0
0
51
1.00
33891--33917
2
13.5
2
100
0
54
51
0
0
48
1.00
35955--35983
2
14.5
2
100
0
58
48
0
0
51
1.00
50236--50284
25
2.0
24
88
4
71
32
28
0
38
1.57
50723--50771
18
2.5
20
80
16
57
12
12
4
71
1.28
50848--50896
25
2.0
25
84
4
64
36
0
28
34
1.58
51460--51525
29
2.2
30
83
2
80
22
15
13
48
1.80
51712--51786
29
2.6
29
89
2
105
44
16
20
20
1.87
58166--58202
11
2.9
13
80
19
51
64
0
0
35
0.94

Tables:   1

The End!