Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011157.1 Corchorus capsularis cultivar CVL-1 contig11178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85121

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
243--344
30
3.4
30
73
15
95
19
12
29
38
1.89
380--481
26
3.7
26
72
22
91
20
13
27
38
1.90
243--485
58
4.3
57
77
11
250
20
13
28
38
1.90
2101--2234
64
2.0
66
91
4
218
47
17
10
23
1.79
4086--4116
2
15.0
2
93
6
53
48
0
3
48
1.17
7337--7366
3
10.0
3
92
0
51
70
0
30
0
0.88
7575--7609
2
17.5
2
100
0
70
51
0
0
48
1.00
8056--8085
5
6.0
5
96
0
51
76
0
0
23
0.78
10692--10751
32
1.9
32
89
3
95
21
20
23
35
1.96
13569--13626
29
2.0
29
100
0
116
24
20
10
44
1.82
14329--14419
24
3.8
24
95
0
155
4
37
4
53
1.41
17901--18240
168
2.0
169
91
2
558
38
13
17
30
1.88
30008--30040
2
17.0
2
93
6
59
51
0
0
48
1.00
30600--30672
31
2.4
30
88
9
103
28
16
4
50
1.63
31133--31326
22
8.9
22
73
11
123
37
11
15
35
1.84
31390--31506
22
5.3
21
79
11
112
30
9
20
39
1.84
32624--32898
109
2.5
109
92
3
444
38
11
1
48
1.50
35280--35336
29
2.0
29
96
0
105
26
8
8
56
1.59
37564--37595
15
2.1
15
100
0
64
18
25
18
37
1.94
39906--39930
11
2.3
11
100
0
50
20
24
0
56
1.43
41992--42061
33
2.1
33
97
0
131
35
32
10
21
1.87
52230--52260
1
31.0
1
100
0
62
0
0
0
100
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58607--58638
16
1.9
17
93
6
57
43
25
12
18
1.85
66992--67086
31
3.1
31
81
3
102
21
21
24
33
1.97
71257--71289
2
16.5
2
93
0
57
51
0
0
48
1.00
72777--72801
2
12.5
2
100
0
50
52
0
0
48
1.00
83551--85121
335
4.8
333
86
4
2191
36
15
14
33
1.88

Tables:   1

The End!