Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011162.1 Corchorus capsularis cultivar CVL-1 contig11183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18720
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:9553 original size:1 final size:1

Alignment explanation


    Indices: 9547--9584  Score: 76
    Period size: 1  Copynumber: 38.0  Consensus size: 1

       9537 TGGATTTAGG

                                                  
       9547 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       9585 CACAATTACT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   37  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:9758 original size:15 final size:15

Alignment explanation


    Indices: 9738--9768  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       9728 CGAAAGAAAC

                           
       9738 TCATGTATTTTGTAA
          1 TCATGTATTTTGTAA

                           
       9753 TCATGTATTTTGTAA
          1 TCATGTATTTTGTAA

             
       9768 T
          1 T

       9769 TGTATATTAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55


Consensus pattern (15 bp):   
TCATGTATTTTGTAA
Done.