Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011164.1 Corchorus capsularis cultivar CVL-1 contig11185, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107252

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11108--11141
2
17.0
2
100
0
68
50
0
50
0
1.00
13451--13484
2
17.0
2
87
0
50
50
5
0
44
1.26
19523--19629
53
2.0
53
94
0
187
40
7
12
40
1.71
20674--20808
74
1.9
71
86
7
191
42
14
9
34
1.78
21709--21785
40
1.9
40
97
0
145
29
20
18
31
1.96
21851--21933
28
3.1
28
65
16
77
33
39
8
18
1.80
21835--21933
51
1.9
51
97
0
189
33
37
8
21
1.83
22604--22633
8
3.8
8
90
0
51
50
10
0
40
1.36
39080--39109
15
2.0
15
93
0
51
26
3
3
66
1.23
39561--39643
28
3.0
28
90
0
121
13
36
3
46
1.60
40366--40655
148
2.0
147
93
0
499
37
8
16
36
1.81
49658--49818
86
1.9
84
89
5
252
32
11
15
40
1.84
60135--60175
21
1.9
22
85
5
57
63
4
14
17
1.47
61068--61094
1
27.0
1
100
0
54
100
0
0
0
0.00
69907--70072
31
5.3
31
82
2
179
19
23
22
34
1.97
69917--70072
63
2.5
63
86
0
222
19
22
22
35
1.96
74837--74864
8
3.5
8
100
0
56
39
10
10
39
1.75
78123--78148
12
2.2
12
100
0
52
34
30
0
34
1.58
84300--84325
12
2.2
12
100
0
52
42
26
7
23
1.81
84369--84410
18
2.3
18
87
0
66
33
23
16
26
1.96
101760--101796
1
37.0
1
100
0
74
0
0
0
100
0.00
102060--102245
98
1.9
98
100
0
372
38
19
11
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102563--102626
30
2.1
31
82
2
76
21
18
20
39
1.93

Tables:   1

The End!