Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011165.1 Corchorus capsularis cultivar CVL-1 contig11186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58708

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1549--1628
28
2.8
28
90
5
115
26
23
12
37
1.90
17908--18003
37
2.6
36
77
12
104
14
17
9
58
1.62
18136--18196
22
2.7
23
75
7
63
40
9
11
37
1.75
18298--18883
22
26.7
22
70
13
179
39
9
15
36
1.80
18467--18591
23
5.5
23
87
1
155
39
7
16
37
1.76
18298--18615
44
7.3
44
72
14
205
40
8
15
35
1.78
18668--18769
45
2.3
44
80
8
100
33
12
14
39
1.84
18780--18825
24
2.0
24
91
4
76
56
6
10
26
1.58
18906--19003
22
4.7
20
71
25
60
43
8
11
36
1.70
18853--19004
62
2.5
62
92
0
241
42
9
13
34
1.78
19882--19963
41
2.0
40
88
2
119
40
18
12
29
1.87
21883--21985
42
2.5
42
79
3
118
46
17
28
7
1.75
22195--22261
33
2.0
33
82
5
82
29
8
37
23
1.86
22808--22880
28
2.6
28
82
0
92
42
10
9
36
1.73
43151--43925
401
1.9
399
97
1
1462
36
17
13
32
1.90

Tables:   1

The End!