Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011166.1 Corchorus capsularis cultivar CVL-1 contig11187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67135

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13591--13625
17
2.1
17
94
0
61
22
22
11
42
1.85
22371--22443
31
2.4
31
82
13
96
35
13
16
34
1.88
24455--24569
30
3.8
30
84
2
142
39
20
19
21
1.93
27001--27058
25
2.4
23
85
5
71
32
22
1
43
1.64
27211--27272
32
1.9
33
93
3
108
16
33
32
17
1.92
27474--27517
20
2.1
21
87
4
63
38
9
38
13
1.77
27726--27799
31
2.4
31
84
8
105
35
13
18
32
1.90
31820--31965
30
4.9
30
77
5
127
41
19
17
22
1.91
31970--32025
29
1.9
29
89
7
87
23
12
23
41
1.88
33213--33243
2
15.5
2
100
0
62
48
0
0
51
1.00
35107--35167
19
3.0
21
76
7
72
39
11
16
32
1.84
36152--36195
19
2.4
19
85
7
65
15
4
22
56
1.57
39778--39867
39
2.3
39
80
7
101
58
5
12
23
1.54
45676--45942
129
2.0
133
84
8
348
37
14
20
27
1.92
50279--50309
2
15.5
2
100
0
62
51
0
0
48
1.00
53432--54274
214
4.0
215
82
3
958
29
15
14
40
1.88
56789--56974
33
5.8
33
87
3
184
44
17
18
20
1.87
56852--56976
31
4.0
31
92
2
187
46
16
20
16
1.84
57490--57529
1
40.0
1
100
0
80
100
0
0
0
0.00
57803--57846
21
2.1
21
91
0
70
34
0
18
47
1.49
62872--63085
109
2.0
104
86
6
295
33
9
7
49
1.64
64230--64310
34
2.4
34
83
2
101
28
6
19
45
1.74

Tables:   1

The End!