Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011168.1 Corchorus capsularis cultivar CVL-1 contig11189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11537
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:1442 original size:54 final size:54

Alignment explanation


    Indices: 1349--1455  Score: 155
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       1339 TCAACACTCT

                             *                                    
       1349 CCTCATCCTTGGCAACTTTATCAATTATCTCGGAGTCATCTTTCCTCTGAGTGA
          1 CCTCATCCTTGGCAACTGTATCAATTATCTCGGAGTCATCTTTCCTCTGAGTGA

                                       *        *                  
       1403 CCTCATCCTTGGCAACTGTATCACA-TGTCAT-GGATTCATCTTTCCTCTGAGTG
          1 CCTCATCCTTGGCAACTGTATCA-ATTATC-TCGGAGTCATCTTTCCTCTGAGTG

       1456 GCCTTTATCT


Statistics
Matches: 48,  Mismatches: 3, Indels: 4
        0.87            0.05        0.07

Matches are distributed among these distances:
  54   46  0.96
  55    2  0.04

ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36


Consensus pattern (54 bp):   
CCTCATCCTTGGCAACTGTATCAATTATCTCGGAGTCATCTTTCCTCTGAGTGA
Done.