Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011172.1 Corchorus capsularis cultivar CVL-1 contig11193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23220

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
285--443
84
1.9
84
92
2
268
35
10
1
51
1.48
3343--3421
30
2.5
31
89
6
124
63
12
6
17
1.49
3354--3403
15
3.3
15
69
20
50
58
12
6
24
1.56
4194--4260
36
1.9
35
88
8
102
40
10
11
37
1.77
4563--4786
91
2.5
91
87
4
310
30
19
13
36
1.91
7787--8009
91
2.5
90
86
3
297
30
18
13
37
1.90
11012--11066
22
2.5
22
91
2
94
52
12
7
27
1.65
13604--13726
44
2.8
44
92
0
201
30
26
15
28
1.96
14839--14920
6
14.3
6
87
10
100
39
0
10
50
1.38
14842--14926
22
3.9
22
93
0
125
38
0
10
50
1.37
15257--15315
20
3.0
20
78
12
68
38
0
6
54
1.27
19118--19159
15
2.8
15
89
7
59
30
9
7
52
1.61
20946--20980
18
1.9
18
88
0
52
25
20
2
51
1.61
22402--22446
15
2.8
16
80
10
56
60
8
2
28
1.39

Tables:   1

The End!