Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011175.1 Corchorus capsularis cultivar CVL-1 contig11196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9216
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34


Found at i:764 original size:10 final size:10

Alignment explanation


    Indices: 749--775  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

        739 GAAAATATTA

                      
        749 TATATATATC
          1 TATATATATC

                      
        759 TATATATATC
          1 TATATATATC

                   
        769 TATATAT
          1 TATATAT

        776 CTTGTTTCTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52


Consensus pattern (10 bp):   
TATATATATC
Done.