Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011177.1 Corchorus capsularis cultivar CVL-1 contig11198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2758
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:2555 original size:5 final size:5

Alignment explanation


    Indices: 2524--2548  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       2514 GCAACCCATG

                                         
       2524 ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT

       2549 TTATTTTTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT
Done.