Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011185.1 Corchorus capsularis cultivar CVL-1 contig11206, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10668
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:777 original size:25 final size:25

Alignment explanation


    Indices: 749--840  Score: 166
    Period size: 25  Copynumber: 3.6  Consensus size: 25

        739 TGGCCTATGT

                                     
        749 GTTTGCTAAACGCAAGCACAGGCTC
          1 GTTTGCTAAACGCAAGCACAGGCTC

                                     
        774 GTTTGCTAAACGCAAGCACAGGCTC
          1 GTTTGCTAAACGCAAGCACAGGCTC

                                     
        799 GTTTGCTAAACGCAAGCACAGGCTC
          1 GTTTGCTAAACGCAAGCACAGGCTC

                   *         
        824 GTTTGCCAAAACGCAAG
          1 GTTTG-CTAAACGCAAG

        841 AACATGAGCG


Statistics
Matches: 65,  Mismatches: 1, Indels: 1
        0.97            0.01        0.01

Matches are distributed among these distances:
  25   55  0.85
  26   10  0.15

ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20


Consensus pattern (25 bp):   
GTTTGCTAAACGCAAGCACAGGCTC
Done.