genome.fa.s11187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011187.1 Corchorus capsularis cultivar CVL-1 contig11208, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47451

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3861--3914	25	2.2	25	78	12	60	24	1	11	62	1.37
9090--9118	15	1.9	15	100	0	58	51	13	6	27	1.66
12487--12516	13	2.3	13	94	0	51	10	0	23	66	1.21
15554--15633	41	2.0	41	94	0	142	31	13	18	36	1.90
16902--16933	11	2.9	11	90	0	55	34	21	9	34	1.86
16926--16965	13	3.1	13	85	0	53	25	15	15	45	1.84
22887--22951	24	2.8	24	77	6	64	56	15	7	20	1.63
22914--22956	21	2.1	21	86	4	61	62	18	4	13	1.48
37345--37434	38	2.4	37	76	7	101	14	18	11	55	1.68
37492--37611	22	5.5	22	74	9	102	42	10	15	32	1.79
37736--38298	22	25.7	22	69	10	183	38	9	15	36	1.80
37928--38031	23	4.6	23	83	3	104	38	9	11	40	1.74
38081--38169	45	2.0	45	82	4	108	33	10	16	39	1.83
38268--38420	62	2.5	62	90	1	234	41	9	13	35	1.77
38330--38375	22	2.1	22	88	8	67	43	10	13	32	1.78
38513--38581	31	2.2	31	89	5	104	28	13	4	53	1.58
38524--38589	31	2.1	31	88	5	98	31	13	4	50	1.62
39133--39200	23	3.0	23	91	0	109	41	26	14	17	1.88
39460--39506	22	2.1	22	92	7	78	34	12	14	38	1.85
39473--39553	22	3.6	22	77	9	65	33	7	17	41	1.77
39512--39578	22	2.9	22	80	13	64	29	4	19	46	1.69
39592--39650	22	2.7	22	79	10	66	44	10	15	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39736--39808	25	3.3	23	76	18	57	43	10	12	32	1.77
39719--39991	22	12.5	22	68	16	124	42	9	13	34	1.77
40072--40123	20	2.6	20	93	0	86	42	13	17	26	1.86
40280--40359	23	3.5	23	76	8	83	33	8	17	40	1.81
40072--40496	22	19.7	21	67	13	141	37	10	16	34	1.84
40522--40568	22	2.2	22	84	3	60	51	4	14	29	1.62

Tables:   1

The End!