Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011190.1 Corchorus capsularis cultivar CVL-1 contig11211, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8993
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:7351 original size:17 final size:17

Alignment explanation


    Indices: 7331--7363  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       7321 GCAGCCTATC

                             
       7331 ACCTCATACTACCTAGT
          1 ACCTCATACTACCTAGT

                            
       7348 ACCTCATACTACCTAG
          1 ACCTCATACTACCTAG

       7364 ATATCATGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.30, C:0.36, G:0.06, T:0.27


Consensus pattern (17 bp):   
ACCTCATACTACCTAGT
Done.