Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011191.1 Corchorus capsularis cultivar CVL-1 contig11212, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70029

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
523--588
18
3.6
17
80
12
60
45
6
3
45
1.43
657--724
35
1.9
35
100
0
136
51
11
2
33
1.54
1025--1051
2
13.5
2
100
0
54
51
0
0
48
1.00
10637--10675
21
1.9
20
94
5
69
10
33
20
35
1.86
12194--12340
73
2.0
73
98
0
285
39
10
21
28
1.87
16877--16975
50
2.0
50
97
0
189
26
16
23
34
1.95
18452--18505
27
2.0
27
96
3
101
27
11
14
46
1.79
18456--18512
27
2.1
27
90
0
87
35
10
17
36
1.84
18894--18951
29
1.9
31
93
6
102
18
18
18
43
1.89
21915--21945
14
2.2
14
100
0
62
32
12
0
54
1.38
29313--29438
57
2.2
57
85
4
164
46
26
7
19
1.75
29857--30247
58
6.7
59
87
4
546
27
34
21
16
1.95
30771--30890
29
4.2
29
81
3
136
27
29
22
20
1.99
30943--31161
53
4.0
54
84
5
257
26
29
23
21
1.99
30895--31161
27
9.9
28
80
11
247
25
29
23
20
1.99
31284--31391
28
4.2
28
74
20
117
27
33
24
14
1.94
31374--31414
19
2.2
19
90
0
64
41
24
21
12
1.87
32514--32560
25
1.9
24
91
4
76
17
25
19
38
1.92
41277--41305
3
9.7
3
100
0
58
68
0
0
31
0.89
45696--45731
19
1.9
18
88
5
54
36
22
0
41
1.54
52853--52880
14
2.0
14
100
0
56
35
0
35
28
1.58
61546--61595
22
2.4
20
81
15
57
64
0
2
34
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63593--63702
58
1.9
58
98
0
211
28
7
23
40
1.81
69161--69485
139
2.3
139
90
1
508
36
10
10
42
1.74
69644--69681
20
1.9
20
88
0
58
21
44
7
26
1.79
69652--69691
21
1.9
20
85
10
53
15
45
12
27
1.82
69827--69884
29
2.0
29
86
6
82
55
1
10
32
1.44

Tables:   1

The End!