Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011192.1 Corchorus capsularis cultivar CVL-1 contig11213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34783

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2508--2626
58
2.1
58
82
6
143
44
7
5
42
1.57
2625--2683
30
2.0
30
89
0
91
44
16
3
35
1.65
2331--2681
192
1.8
193
94
0
632
45
9
5
39
1.60
7701--7763
31
2.0
31
100
0
126
36
12
9
41
1.76
8348--8394
14
3.1
15
80
17
53
80
10
8
0
0.89
9307--9339
17
1.9
17
100
0
66
27
6
36
30
1.81
13862--13917
26
2.2
26
96
0
103
21
3
8
66
1.35
14559--14637
31
2.5
31
80
11
90
35
20
11
32
1.88
15477--15587
56
2.0
56
98
0
213
54
2
12
29
1.51
15998--16028
15
2.1
15
93
0
53
61
9
12
16
1.56
16480--16514
15
2.3
15
90
0
52
17
11
22
48
1.79
16758--16789
15
2.1
15
94
0
55
59
9
12
18
1.59
16795--16858
33
1.9
34
84
9
87
64
7
12
15
1.49
17217--17274
24
2.4
25
85
8
84
17
10
29
43
1.82
18375--18417
12
3.5
12
82
17
61
6
0
44
48
1.29
18373--18413
13
3.2
13
83
16
50
7
0
43
48
1.30
26050--26101
25
2.1
25
92
0
86
63
3
3
28
1.30
26050--26092
13
3.4
13
75
18
54
62
2
4
30
1.28

Tables:   1

The End!