Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011194.1 Corchorus capsularis cultivar CVL-1 contig11215, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88228

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1956--1982
1
27.0
1
100
0
54
0
0
0
100
0.00
2504--2903
212
1.9
211
97
0
755
29
21
18
30
1.97
6497--6538
20
2.1
20
95
0
75
45
0
33
21
1.52
6878--6968
37
2.4
37
92
3
146
46
18
9
25
1.80
6908--7028
59
2.1
57
93
3
206
49
17
6
26
1.71
6949--6988
22
1.9
22
90
10
66
47
25
2
25
1.64
6967--7041
37
2.0
37
94
0
132
52
13
8
26
1.68
6857--7041
96
1.9
96
93
0
316
48
17
8
25
1.76
8320--9009
345
2.0
345
100
0
1380
31
15
19
33
1.93
9028--9099
29
2.4
30
88
2
110
41
23
0
34
1.55
9638--9684
23
2.1
22
84
4
58
31
8
17
42
1.79
10732--10765
2
17.0
2
100
0
68
50
0
0
50
1.00
13304--13370
29
2.3
29
86
2
89
37
2
20
38
1.68
14057--14108
15
3.5
14
76
10
50
61
0
1
36
1.07
25936--25984
4
12.8
4
82
8
50
51
0
0
48
1.00
33076--33104
9
3.2
9
100
0
58
0
10
0
89
0.48
43180--43530
183
1.9
176
88
6
517
21
25
19
33
1.97
43791--43891
32
3.0
32
75
18
114
36
11
24
26
1.90
43796--43869
37
2.0
36
87
7
105
37
10
24
27
1.88
59760--59791
16
1.9
17
93
6
57
21
6
12
59
1.55
77032--77096
32
2.0
33
90
3
105
41
12
20
26
1.87
78612--78678
27
2.6
26
88
6
102
20
31
43
4
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78612--78686
27
3.1
23
85
11
82
20
33
42
4
1.70
86181--86214
16
2.1
17
88
5
52
38
29
20
11
1.88
87733--88228
197
2.6
196
80
11
562
37
18
11
32
1.87

Tables:   1

The End!