genome.fa.s11195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011195.1 Corchorus capsularis cultivar CVL-1 contig11216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72214

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--936	199	4.7	198	83	8	1128	35	16	13	34	1.88
421--449	12	2.4	12	100	0	58	31	6	6	55	1.53
1351--1415	26	2.5	25	85	9	85	27	20	9	43	1.82
3640--3672	2	16.5	2	100	0	66	0	0	48	51	1.00
3749--3818	28	2.7	26	84	8	97	52	10	18	18	1.72
6214--6501	156	1.9	155	84	7	388	32	19	13	34	1.91
6369--7558	199	6.0	199	85	2	1464	35	18	13	33	1.90
6369--8632	397	5.6	396	76	8	2006	34	17	13	34	1.89
7791--8632	200	4.2	200	87	1	1132	34	17	13	34	1.89
6373--8630	400	5.6	399	75	9	1545	34	17	13	34	1.89
10786--10822	19	1.9	20	88	5	58	32	8	8	51	1.61
16494--16628	31	4.3	31	81	3	135	19	22	22	35	1.96
16534--16628	33	2.9	33	87	3	131	15	22	24	37	1.93
18358--18400	23	2.0	22	86	9	61	60	20	9	9	1.55
24539--24617	31	2.5	31	85	4	106	35	10	20	34	1.86
30232--30279	2	24.0	2	83	8	62	50	2	0	47	1.12
30699--30747	17	3.0	17	79	8	57	79	14	0	6	0.91
34300--34365	34	1.9	34	96	0	123	27	24	6	42	1.78
37447--37501	27	2.0	27	100	0	110	27	14	32	25	1.95
46689--46721	1	33.0	1	100	0	66	100	0	0	0	0.00
56872--56917	8	5.8	8	92	0	56	39	34	0	26	1.57
56872--56917	12	3.8	12	88	0	56	39	34	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65660--65754	48	2.0	49	93	2	165	15	38	33	11	1.84
65669--65777	22	4.7	22	70	16	78	14	38	33	12	1.85
66987--67155	81	2.1	81	96	0	311	34	27	4	33	1.76
68441--68467	6	4.5	6	100	0	54	66	0	14	18	1.25
70564--70712	75	2.0	75	90	0	235	37	12	12	36	1.82
70564--70732	75	2.3	75	88	2	232	37	12	12	37	1.81
70805--71086	134	2.1	134	88	1	422	33	10	14	41	1.79

Tables:   1

The End!