Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011196.1 Corchorus capsularis cultivar CVL-1 contig11217, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7271
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:1383 original size:33 final size:33

Alignment explanation


    Indices: 1333--1456  Score: 144
    Period size: 33  Copynumber: 3.7  Consensus size: 33

       1323 CCGCGCAACA

                                              *
       1333 CCGGCCACAAGACCGGCCACGCGACATGGACATGT
          1 CCGGCCAC-A-ACCGGCCACGCGACATGGACATGC

                                             *
       1368 CCGGCCATC-ACCGGCCACGCGACATGGACATGG
          1 CCGGCCA-CAACCGGCCACGCGACATGGACATGC

                 *           **         *     
       1401 CCGGCTACAACCGGCCAAACGAC-TCGGCCATGC
          1 CCGGCCACAACCGGCCACGCGACAT-GGACATGC

                                   
       1434 CCGGCCACAACCGGCCACGCGAC
          1 CCGGCCACAACCGGCCACGCGAC

       1457 CCTTTGTCTA


Statistics
Matches: 77,  Mismatches: 9, Indels: 8
        0.82            0.10        0.09

Matches are distributed among these distances:
  32    2  0.03
  33   67  0.87
  35    7  0.09
  36    1  0.01

ACGTcount: A:0.23, C:0.42, G:0.27, T:0.07


Consensus pattern (33 bp):   
CCGGCCACAACCGGCCACGCGACATGGACATGC
Done.