Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011202.1 Corchorus capsularis cultivar CVL-1 contig11223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73816

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1200--1232
17
1.9
17
93
0
57
60
15
0
24
1.35
2783--2809
1
27.0
1
100
0
54
100
0
0
0
0.00
5801--5829
14
2.0
15
93
6
51
27
6
17
48
1.72
7073--7128
24
2.3
23
79
8
67
53
14
0
32
1.41
7573--7732
60
2.7
60
88
1
232
36
17
18
27
1.93
7633--7763
31
4.3
31
75
7
115
40
17
16
25
1.90
7801--7962
31
5.4
31
68
14
140
26
18
20
34
1.96
7793--7958
60
2.8
60
89
0
269
25
19
19
34
1.96
9016--9175
31
5.5
31
75
13
113
18
22
25
33
1.97
9067--9169
53
1.9
53
88
0
152
17
20
26
35
1.94
9443--9499
28
2.0
28
100
0
114
31
21
10
36
1.87
11681--12017
168
2.0
167
95
0
602
25
21
12
40
1.88
11943--12099
74
2.1
74
96
0
287
21
31
8
38
1.84
13503--13537
16
2.2
16
94
0
61
45
14
25
14
1.82
15781--15833
22
2.4
22
90
0
79
26
20
11
41
1.86
30957--30985
14
2.1
14
100
0
58
6
31
13
48
1.69
36318--36343
13
2.0
13
100
0
52
30
23
0
46
1.53
36479--36536
25
2.4
25
88
8
86
27
24
12
36
1.91
36489--36540
25
2.1
24
96
3
95
23
26
11
38
1.89
38873--39003
64
2.0
64
100
0
262
42
7
7
41
1.62
42992--43017
2
13.0
2
100
0
52
50
0
0
50
1.00
44107--44136
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45417--45915
247
2.0
247
96
0
917
26
19
15
38
1.92
46182--46447
137
1.9
137
95
0
478
29
28
26
15
1.96
49211--49259
21
2.3
21
82
6
55
40
16
28
14
1.87
56614--56659
22
2.1
22
95
0
83
47
0
26
26
1.52
65836--65886
25
2.1
22
77
22
57
19
3
9
66
1.36

Tables:   1

The End!