Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011204.1 Corchorus capsularis cultivar CVL-1 contig11225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55358

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10221--10279
11
5.4
10
84
15
73
49
10
13
27
1.74
10221--10283
22
2.8
22
92
2
108
49
11
12
26
1.74
12521--12557
19
1.9
19
88
0
56
2
18
0
78
0.87
12512--12568
27
2.1
28
87
9
82
3
19
1
75
1.04
15919--15984
16
4.1
16
90
0
105
46
7
9
36
1.64
16081--16136
24
2.4
25
85
11
66
57
8
7
26
1.55
16244--16316
27
2.7
26
87
10
94
47
27
10
13
1.76
16815--16850
17
2.1
17
90
10
56
52
5
16
25
1.65
18249--18282
11
3.2
10
84
15
50
29
2
17
50
1.61
19902--19965
30
2.1
30
88
0
92
54
4
14
26
1.59
25047--25080
11
3.2
10
84
15
50
29
2
17
50
1.61
29709--29758
26
1.9
26
95
0
91
58
22
8
12
1.59
29987--30011
1
25.0
1
100
0
50
100
0
0
0
0.00
36837--36865
15
1.9
15
100
0
58
13
37
0
48
1.43
39095--39128
16
2.0
17
88
11
52
29
52
17
0
1.45
39161--39202
16
2.6
16
92
0
66
35
40
14
9
1.78
39971--40095
6
19.2
6
69
26
69
35
42
18
4
1.69
39973--40013
11
3.6
11
83
3
55
29
48
19
2
1.61
40002--40091
16
5.8
16
85
10
132
38
40
16
4
1.69
40002--40091
31
2.9
31
85
11
130
38
40
16
4
1.69
39984--40091
47
2.3
47
90
1
162
37
40
17
4
1.70
40728--40829
51
2.0
51
96
0
186
31
4
14
49
1.65

Tables:   1

The End!