genome.fa.s11206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011206.1 Corchorus capsularis cultivar CVL-1 contig11227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67166

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087--1136	20	2.5	19	81	15	57	54	2	2	42	1.23
7092--7126	14	2.4	15	90	4	54	85	0	14	0	0.59
10530--10607	39	2.1	38	95	4	140	35	11	29	23	1.90
11637--11690	16	3.5	16	85	5	67	5	20	37	37	1.76
12567--12633	16	4.2	14	80	17	62	10	22	37	29	1.88
12567--12633	32	2.1	32	88	5	100	10	22	37	29	1.88
12605--12649	23	2.0	23	90	0	72	8	20	37	33	1.83
14813--15020	75	2.8	76	74	9	174	36	16	16	30	1.91
23825--23907	39	2.2	38	82	2	94	56	3	9	30	1.48
23952--24013	32	1.9	32	90	0	97	54	8	14	22	1.66
24293--24336	6	7.5	6	97	2	81	54	13	0	31	1.39
26255--26288	14	2.4	14	90	0	50	17	2	8	70	1.25
32349--32382	14	2.4	14	90	0	50	17	2	8	70	1.25
35928--35971	23	1.9	23	100	0	88	27	18	13	40	1.88
38995--39349	119	3.0	117	86	5	484	35	23	8	32	1.85
40479--40693	22	9.8	21	69	13	85	37	12	15	34	1.84
40496--40602	44	2.4	44	73	6	101	35	14	14	34	1.88
40632--40692	21	2.8	21	82	9	61	39	8	14	37	1.76
40674--40723	26	1.9	26	91	0	82	30	10	32	28	1.89
40695--40736	22	1.9	22	90	0	66	30	11	26	30	1.92
40852--40948	22	4.5	22	72	6	81	34	11	17	37	1.86
41021--41047	12	2.2	12	100	0	54	55	0	7	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56538--56575	18	2.1	18	95	0	67	34	2	10	52	1.50
56580--56626	24	2.0	24	82	0	58	21	27	29	21	1.98
57228--57262	17	2.1	17	88	0	52	22	8	14	54	1.67
58813--58946	32	4.2	32	88	1	189	32	25	17	23	1.97
58812--58956	63	2.2	64	85	3	193	33	24	17	24	1.96
59606--59640	18	1.9	18	88	0	52	40	2	8	48	1.49
66436--66467	2	16.5	2	93	6	57	50	0	0	50	1.00

Tables:   1

The End!