Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011209.1 Corchorus capsularis cultivar CVL-1 contig11230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5120
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:2893 original size:58 final size:58

Alignment explanation


    Indices: 2803--3046  Score: 362
    Period size: 58  Copynumber: 4.1  Consensus size: 58

       2793 TTGGGGGTTT

                 *                                                    
       2803 TTTTTTTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGC
          1 TTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGC

                 *                                                  * 
       2861 TTTTTATGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAAC
          1 TTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGC

                                       *                               
       2919 TTTTTGTGCTCTAACTTTTGCCTAAGCTGTCCTTTGCAGGATTTTCAACTTAGCGAGCC
          1 TTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAG-C

                                              *                              
       2978 TTTTTTTTTTTTTGTGCTCTAACTTTTGCCTAAGTCGTCCTTTGCAGGATTTTCAACTTAGCGAG
          1 --------TTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAG

             
       3043 C
         58 C

               
       3044 TTT
          1 TTT

       3047 GCAAGTAGTT


Statistics
Matches: 170,  Mismatches: 7, Indels: 18
        0.87            0.04        0.09

Matches are distributed among these distances:
  58  113  0.66
  59    1  0.01
  66    1  0.01
  67   55  0.32

ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43


Consensus pattern (58 bp):   
TTTTTGTGCTCTAACTTTTGCCTAAGCCGTCCTTTGCAGGATTTTCAACTTAGCGAGC
Done.