Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011211.1 Corchorus capsularis cultivar CVL-1 contig11232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53186

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--126
12
4.2
12
73
9
50
19
37
1
41
1.63
3770--3819
23
2.2
23
88
0
73
42
32
6
20
1.76
6064--6271
41
5.1
41
86
1
267
45
13
18
22
1.84
6064--6271
81
2.6
81
87
3
285
45
13
18
22
1.84
6083--6415
37
8.6
37
79
10
212
45
10
19
24
1.81
6419--6918
37
12.9
37
86
8
606
46
12
18
21
1.82
6419--6901
79
6.2
78
89
5
639
46
12
18
21
1.82
6857--7090
35
6.7
35
79
6
190
47
11
16
24
1.79
7051--7153
32
3.3
31
75
6
109
44
8
18
28
1.79
7068--7205
36
4.1
36
75
12
141
42
10
19
27
1.83
11136--11245
56
1.9
57
94
1
195
22
3
24
49
1.66
14412--14447
18
2.0
18
100
0
72
33
5
27
33
1.80
15312--15336
5
5.0
5
100
0
50
20
0
0
80
0.72
18859--19092
119
2.0
119
96
0
432
30
24
19
25
1.98
22956--22995
2
21.5
2
80
14
50
50
2
0
47
1.14
22956--22995
9
4.6
9
84
6
55
50
2
0
47
1.14
23918--23958
21
2.0
21
90
0
64
19
43
7
29
1.78
24030--24088
25
2.4
25
91
5
95
35
23
0
40
1.55
24098--24165
26
2.6
26
95
0
118
52
11
1
33
1.47
24098--24165
15
5.1
15
70
26
62
52
11
1
33
1.47
24218--24257
10
3.9
10
87
6
62
67
0
0
32
0.91
24261--24376
33
3.5
33
86
6
146
15
33
34
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24385--24427
12
3.5
12
87
12
61
34
0
2
62
1.08
24566--24610
21
2.1
21
91
0
72
37
8
35
17
1.81
26126--26220
47
2.0
47
91
4
156
50
9
23
16
1.74
26820--26854
2
17.5
2
93
0
61
51
0
0
48
1.00
28692--28720
7
4.1
7
100
0
58
31
41
13
13
1.84
29145--29170
7
3.7
7
100
0
52
15
26
11
46
1.80
33960--34003
11
4.0
11
85
8
54
54
2
0
43
1.12
34309--34392
41
2.0
42
97
2
161
46
7
4
41
1.52
39373--39404
12
2.7
12
95
0
55
3
15
28
53
1.57
39611--39646
10
3.5
10
85
7
54
47
0
0
52
1.00
39619--39678
31
1.9
32
86
3
86
46
0
1
51
1.10
39784--39826
20
2.1
21
86
4
61
20
18
20
39
1.93
39814--39896
42
2.0
43
88
7
125
34
24
18
22
1.96
40728--40789
24
2.4
26
81
15
83
33
1
30
33
1.68
43736--43767
7
4.7
7
92
7
57
84
0
0
15
0.63
43736--43767
13
2.4
14
94
5
57
84
0
0
15
0.63

Tables:   1

The End!