genome.fa.s11212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011212.1 Corchorus capsularis cultivar CVL-1 contig11233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113581

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3761--3817	2	29.5	2	76	13	57	52	1	1	43	1.21
5022--5054	16	2.1	16	88	5	50	9	6	39	45	1.61
5568--6351	324	2.4	323	94	1	1356	30	16	16	36	1.91
7312--7336	2	12.5	2	100	0	50	48	0	0	52	1.00
15954--16005	6	8.7	6	80	0	50	36	0	53	9	1.34
17706--17818	58	2.0	57	89	1	172	23	14	23	38	1.92
17936--17966	2	15.5	2	100	0	62	51	48	0	0	1.00
35954--35999	23	2.0	23	95	0	83	30	19	34	15	1.93
40222--40316	50	1.9	48	89	4	145	31	35	12	20	1.90
42486--42527	18	2.3	18	87	0	57	11	28	7	52	1.64
49827--49866	21	1.9	21	94	0	71	12	20	10	57	1.63
51206--51256	26	1.9	27	92	4	86	31	39	11	17	1.86
51206--51263	26	2.1	27	84	6	73	36	37	10	15	1.82
51242--51387	50	2.9	50	91	1	240	30	34	13	21	1.92
52419--52453	18	1.9	18	94	0	61	54	22	8	14	1.67
52970--53076	33	3.2	33	84	2	135	23	38	28	9	1.86
54048--54081	8	4.1	8	85	7	50	58	14	2	23	1.50
54154--54187	9	3.7	9	88	7	50	85	0	0	14	0.60
59521--59623	33	3.1	33	79	5	93	23	37	29	9	1.87
61315--61407	11	7.1	14	65	22	58	33	2	8	55	1.42
61346--61413	26	2.6	26	86	9	102	33	1	10	54	1.43
61422--61481	25	2.5	25	86	5	79	43	0	20	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63505--63577	23	3.2	23	73	22	82	53	15	23	8	1.68
64415--64469	21	2.6	21	85	5	67	18	10	25	45	1.82
64492--64546	21	2.6	21	88	5	76	18	12	25	43	1.85
64375--64677	77	3.9	77	89	2	450	24	11	20	42	1.85
64594--64733	56	2.5	56	90	3	212	23	12	22	41	1.87
64705--64754	21	2.4	21	86	6	66	20	10	26	44	1.82
64649--64810	77	2.1	77	92	0	270	22	11	24	41	1.87
64721--64862	56	2.5	56	91	2	223	23	11	23	41	1.86
64513--64942	132	3.3	132	89	1	607	24	12	21	41	1.88
64841--64882	20	2.1	20	86	0	57	19	19	21	40	1.92
64785--65088	76	4.0	76	85	4	389	26	13	19	40	1.89
64909--64963	21	2.6	21	85	5	67	18	12	25	43	1.85
64777--65089	78	4.1	76	84	5	380	26	13	20	40	1.88
69267--69363	46	2.1	46	96	1	178	60	10	12	16	1.58
69518--69543	13	2.0	13	100	0	52	53	0	0	46	1.00
74339--74652	158	2.0	154	96	2	574	30	26	14	28	1.95
78145--78201	30	1.9	30	96	0	105	47	8	5	38	1.57
78370--78501	43	3.2	43	61	30	104	43	5	10	40	1.62
78361--78528	82	2.0	82	96	2	311	44	5	11	38	1.66
81447--81504	30	1.9	30	96	0	107	43	15	3	37	1.64
81798--81839	21	2.0	21	100	0	84	52	28	14	4	1.62
83201--83242	21	2.0	21	90	9	68	80	0	19	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83209--83247	5	7.8	5	83	11	53	82	0	17	0	0.68
85217--85268	26	2.0	26	100	0	104	15	23	46	15	1.83
87022--87049	14	2.0	14	100	0	56	35	14	14	35	1.86
91699--91729	1	31.0	1	100	0	62	100	0	0	0	0.00
95309--95337	13	2.3	13	94	5	51	6	0	44	48	1.29
96545--96613	34	2.1	34	89	5	106	28	18	2	49	1.62
96645--96703	27	2.1	28	93	3	102	15	22	3	59	1.51
96648--96694	13	3.5	13	72	16	51	10	25	2	61	1.39
96645--96717	27	2.7	27	85	10	87	15	23	2	58	1.49
96764--96802	20	2.0	20	94	0	69	20	17	5	56	1.60
96885--96944	20	3.3	20	64	33	53	20	26	0	53	1.46
96840--96963	34	3.7	33	83	7	139	20	23	1	54	1.53
96942--97039	22	4.5	22	80	14	114	22	22	7	47	1.75
96941--97042	44	2.3	44	98	0	195	22	21	6	49	1.73
97057--97204	22	6.8	22	74	7	79	22	22	6	49	1.71
97154--97318	22	7.6	22	74	9	126	25	22	4	47	1.71
97154--97328	86	2.0	85	93	1	296	26	21	4	47	1.70
97328--97405	20	3.8	20	83	3	102	16	20	6	56	1.62
97329--97405	41	1.9	40	94	2	136	15	20	6	57	1.61
97333--97418	41	2.1	41	85	6	113	18	19	5	55	1.62
99481--99919	49	9.0	49	87	2	569	31	14	30	22	1.94
99477--99920	147	3.0	147	91	2	691	31	14	30	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100529--100642	51	2.2	52	80	10	130	37	15	4	42	1.67
100804--101076	51	5.3	51	85	3	345	43	13	2	39	1.60
100925--100964	21	2.0	21	90	5	64	42	15	2	40	1.60
100976--101015	21	2.0	21	90	5	64	42	15	2	40	1.60
106336--106543	103	2.0	103	99	0	407	30	15	26	27	1.96
110827--110895	22	3.2	22	82	8	72	43	18	7	30	1.77
110979--111060	42	1.9	43	82	2	103	37	18	7	36	1.79
111334--111374	18	2.2	19	86	4	57	26	0	9	63	1.25
111333--111377	19	2.3	20	81	11	58	26	0	11	62	1.29
111940--111988	22	2.2	23	78	10	57	44	12	10	32	1.75
111950--112010	22	2.8	22	87	0	77	37	19	6	36	1.78
111995--112420	22	19.3	22	65	14	92	36	19	9	35	1.84
112197--112293	48	2.0	48	83	0	122	34	21	6	38	1.79
112340--112396	21	2.6	21	83	5	69	33	12	10	43	1.76

Tables:   1

The End!