Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011215.1 Corchorus capsularis cultivar CVL-1 contig11236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63285

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3530--3562
16
2.1
16
100
0
66
54
6
30
9
1.56
13338--13382
21
2.1
21
87
0
63
17
40
8
33
1.81
19020--19047
12
2.3
12
100
0
56
21
7
25
46
1.76
19284--19334
22
2.3
22
86
0
66
39
9
7
43
1.67
19458--19503
22
2.1
21
92
4
74
43
15
4
36
1.66
19466--19927
22
21.0
22
74
7
303
36
16
9
37
1.82
19946--20001
22
2.5
22
82
5
69
37
12
8
41
1.74
21363--21395
17
1.9
17
100
0
66
39
0
12
48
1.40
21694--21751
29
2.0
29
86
0
80
37
8
20
32
1.83
22558--22597
5
8.0
5
100
0
80
60
0
0
40
0.97
35066--35166
31
3.3
31
66
10
82
36
16
17
28
1.92
35223--35364
60
2.4
60
82
7
164
28
16
17
36
1.92
37316--37352
18
2.1
18
100
0
74
56
10
10
21
1.64
40559--40664
54
2.0
54
94
0
185
16
17
16
49
1.81
41019--41047
2
15.0
2
92
7
51
51
0
0
48
1.00
59617--59699
42
2.0
43
85
7
116
26
16
20
36
1.94
59924--60015
38
2.4
38
100
0
184
20
19
20
39
1.93
62380--62501
61
2.0
61
98
0
235
51
8
16
23
1.71
62404--62538
61
2.2
60
80
6
139
56
5
14
24
1.58

Tables:   1

The End!