Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011217.1 Corchorus capsularis cultivar CVL-1 contig11238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28816

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12922--12957
2
17.0
2
88
11
54
47
5
0
47
1.25
12919--12957
12
3.0
13
92
7
62
46
7
0
46
1.31
14278--14343
33
2.0
33
90
0
105
25
18
13
42
1.87
15927--16124
32
5.9
32
80
13
220
29
20
6
43
1.76
15905--16138
68
3.4
68
96
0
414
28
20
6
43
1.78
16134--16425
41
7.1
40
87
4
356
24
18
10
46
1.81
16167--16425
123
2.1
123
89
2
394
24
18
10
47
1.79
16415--16531
37
3.2
37
84
4
155
26
20
8
44
1.80
16839--16976
39
3.7
41
67
23
115
28
18
7
44
1.77
16784--17308
70
7.5
70
90
0
773
27
18
10
44
1.82
21710--21839
64
2.0
64
100
0
260
21
6
13
59
1.56
23735--23794
18
3.3
18
70
9
59
60
10
1
28
1.39
25600--25663
27
2.3
27
91
2
110
56
7
26
9
1.58
27049--27502
51
8.8
51
87
3
550
29
23
12
34
1.92
27061--27501
156
2.8
154
84
4
521
29
23
12
34
1.92
27049--27502
207
2.2
207
85
1
624
29
23
12
34
1.92
27398--27527
51
2.4
56
75
13
153
28
29
12
30
1.93
27558--27692
72
1.9
72
92
0
225
25
21
15
37
1.93

Tables:   1

The End!