Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011218.1 Corchorus capsularis cultivar CVL-1 contig11239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:380 original size:15 final size:15

Alignment explanation


    Indices: 360--390  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        350 AGATTGGTGC

                           
        360 AAAATTGAAGAGTAT
          1 AAAATTGAAGAGTAT

                           
        375 AAAATTGAAGAGTAT
          1 AAAATTGAAGAGTAT

             
        390 A
          1 A

        391 TATAGGCATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.55, C:0.00, G:0.19, T:0.26


Consensus pattern (15 bp):   
AAAATTGAAGAGTAT
Done.