genome.fa.s11221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011221.1 Corchorus capsularis cultivar CVL-1 contig11242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135932

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778--804	5	5.4	5	100	0	54	40	37	22	0	1.54
1640--1723	44	1.9	44	92	0	141	25	15	21	38	1.92
3888--3928	17	2.4	18	80	12	50	4	9	36	48	1.58
4590--4644	26	2.1	26	83	6	67	30	20	10	38	1.87
4731--4765	16	2.2	16	100	0	70	11	25	17	45	1.81
5510--5680	78	2.1	81	87	9	253	12	19	14	54	1.71
7676--7730	26	2.1	26	83	6	67	30	20	10	38	1.87
8550--8604	26	2.1	26	83	6	67	30	20	10	38	1.87
8692--8727	16	2.2	17	95	5	65	11	22	16	50	1.77
9504--9557	28	1.9	28	96	0	99	33	29	5	31	1.80
18050--18187	16	8.6	16	72	9	102	14	10	36	37	1.81
18080--18187	32	3.4	32	89	2	164	16	10	35	37	1.83
18343--18462	16	7.5	16	77	0	123	5	12	31	50	1.61
18343--18456	32	3.6	32	92	0	201	4	12	31	51	1.59
18515--18544	15	1.9	16	93	6	53	0	13	40	46	1.43
24310--24574	35	7.6	35	85	4	272	33	18	8	39	1.81
28410--28702	36	8.2	36	67	12	145	38	27	16	17	1.91
28479--28661	35	5.1	35	66	15	115	40	26	16	16	1.89
28432--28708	71	3.9	72	78	5	285	39	27	16	16	1.90
28434--28698	142	1.9	144	84	4	358	40	26	16	16	1.90
28904--28999	34	2.8	35	84	4	124	34	21	22	20	1.97
29976--30012	16	2.3	16	90	0	56	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30325--30383	6	9.5	6	82	12	66	15	18	0	66	1.26
30313--30379	18	3.6	18	82	9	73	14	20	0	64	1.29
30711--30747	14	2.6	14	82	0	56	32	5	10	51	1.60
31104--31136	2	16.5	2	100	0	66	51	0	0	48	1.00
44463--44872	183	2.2	183	83	6	501	31	16	17	34	1.92
50875--51186	35	8.9	34	85	4	322	33	19	8	38	1.83
56623--56647	2	12.5	2	100	0	50	52	0	0	48	1.00
58024--58049	12	2.2	12	100	0	52	84	7	0	7	0.77
59778--59907	49	2.6	49	85	6	156	50	6	18	24	1.69
61082--61220	36	3.8	36	80	11	165	46	7	21	24	1.78
61220--61347	36	3.5	36	81	7	143	46	12	14	26	1.81
61338--61466	47	2.7	47	97	1	240	44	11	20	22	1.84
61426--61607	36	5.1	36	84	9	248	43	9	21	24	1.83
61432--61621	69	2.7	70	87	6	269	45	9	20	25	1.81
70959--70988	11	2.7	11	94	0	51	56	0	0	43	0.99
79902--79968	33	2.0	33	85	5	91	19	29	8	41	1.82
85507--85545	19	2.1	19	100	0	78	5	30	20	43	1.73
85511--85552	19	2.4	17	88	11	59	4	30	14	50	1.63
96421--96453	16	2.1	16	88	5	50	60	9	3	27	1.42
97906--97944	20	1.9	21	84	5	53	56	2	20	20	1.54
98453--98635	26	6.9	26	79	16	189	55	8	20	15	1.65
98454--98635	53	3.4	53	93	0	310	55	8	20	15	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98444--98677	106	2.2	105	81	7	294	53	8	20	17	1.69
98741--98775	7	5.0	7	85	0	52	54	2	25	17	1.57
98713--98775	14	4.6	14	74	4	56	53	3	25	17	1.58
98811--99121	40	7.4	40	70	17	170	56	3	20	19	1.56
98875--98954	20	4.0	20	75	8	72	51	3	21	23	1.64
98987--99095	14	7.9	14	72	10	89	60	2	19	17	1.48
98990--99121	28	4.5	28	76	14	133	59	3	19	17	1.50
98987--99105	7	17.1	7	70	1	78	59	3	19	17	1.51
99035--99208	35	5.1	35	71	12	107	57	3	20	18	1.55
98839--99173	21	15.7	21	66	14	80	56	3	20	19	1.57
99176--99265	42	2.1	43	81	6	103	52	7	15	24	1.69
99239--99265	14	1.9	14	100	0	54	51	7	18	22	1.70
101914--101957	14	3.1	13	81	18	52	50	0	2	47	1.13
104502--104538	17	2.2	17	90	0	56	35	10	21	32	1.88
104836--104893	30	2.0	30	86	3	82	44	6	24	24	1.77
110958--111008	5	10.2	5	87	8	77	80	19	0	0	0.71
110963--111011	21	2.3	21	96	0	89	79	20	0	0	0.73
111019--111095	39	2.0	40	94	2	138	41	24	10	23	1.85
111136--111219	29	2.8	29	85	5	105	34	27	15	22	1.94
111069--111238	27	5.7	29	75	13	114	32	26	15	25	1.95
111308--111708	88	4.5	87	85	4	491	29	22	15	31	1.95
112784--112826	15	2.8	15	78	3	50	11	9	34	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120045--120119	31	2.5	31	88	2	107	32	26	17	24	1.97
120126--120183	16	3.6	16	77	13	73	27	10	22	39	1.86
124723--124775	22	2.3	22	83	6	61	0	28	0	71	0.86

Tables:   1

The End!