Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011222.1 Corchorus capsularis cultivar CVL-1 contig11243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10238

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3921--3958
20
2.0
19
85
10
51
42
13
5
39
1.66
5404--5443
18
2.2
19
86
4
55
50
7
5
37
1.53
5455--5492
14
2.6
15
84
16
53
47
7
10
34
1.67
5432--5492
14
4.4
13
73
20
52
49
9
11
29
1.71
6308--6475
87
1.9
86
86
3
239
38
10
22
29
1.87
7204--7799
37
15.7
37
71
10
368
23
16
14
44
1.85
7196--7474
74
3.8
74
96
0
504
23
16
14
45
1.85
7421--7527
53
2.0
53
96
0
196
26
15
10
47
1.77
7347--7601
127
2.0
127
95
0
456
24
16
13
46
1.82
7388--7564
90
2.0
91
84
5
234
24
16
13
45
1.84
7474--7799
74
4.4
74
87
3
478
23
17
15
44
1.86
7273--7674
201
2.0
200
93
2
691
24
16
13
45
1.84
7474--7784
147
2.1
147
89
1
471
24
17
15
43
1.86
7952--8067
43
2.7
43
83
7
130
41
18
5
35
1.72
8026--8240
35
5.9
35
69
12
101
40
18
7
33
1.78
7959--8409
148
3.1
147
88
3
626
39
18
7
33
1.79
8188--8266
35
2.3
35
84
0
95
46
15
7
30
1.73

Tables:   1

The End!