genome.fa.s11223.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011223.1 Corchorus capsularis cultivar CVL-1 contig11244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62897

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2413--2459	23	2.0	23	91	0	76	17	2	38	42	1.61
15902--15942	20	2.0	21	90	4	66	9	21	12	56	1.65
19169--19193	13	1.9	13	100	0	50	24	20	24	32	1.98
20490--20611	36	3.4	36	72	15	108	30	36	8	24	1.85
20389--20969	72	8.1	71	70	16	263	29	41	8	20	1.82
20786--20969	76	2.5	77	91	7	292	26	42	10	21	1.84
20833--20975	36	3.8	36	75	13	146	26	44	9	19	1.82
20786--20978	36	5.2	36	69	14	142	26	43	9	20	1.83
23400--23444	21	2.0	22	91	8	74	35	13	0	51	1.41
23467--23508	19	2.2	20	91	4	68	28	14	11	45	1.80
24095--24133	19	2.1	19	100	0	78	20	0	15	64	1.30
27620--27666	24	2.0	24	87	8	69	59	10	10	19	1.59
27845--27936	45	2.0	45	93	0	157	44	8	17	29	1.78
29018--29050	17	1.9	17	88	11	50	45	3	3	48	1.33
30977--31027	15	3.3	15	78	5	57	56	31	3	7	1.46
39033--39082	21	2.4	21	82	0	64	56	2	38	4	1.30
43651--43743	27	3.5	26	79	5	98	18	21	23	36	1.95
43670--43743	25	2.8	27	85	4	89	18	22	25	32	1.97
47737--48475	55	13.6	55	88	4	1077	49	6	17	26	1.72
47913--48054	26	5.2	25	64	24	74	50	7	18	23	1.71
48433--48494	16	3.8	15	76	17	61	48	8	17	25	1.75
49764--49796	7	4.7	7	96	0	57	18	15	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51988--52027	20	2.0	20	85	0	53	17	7	10	65	1.46
52183--52216	11	3.2	10	84	15	50	29	2	17	50	1.61
59760--59811	26	2.0	26	100	0	104	11	0	46	42	1.40
60515--60562	2	25.5	2	76	19	50	43	0	2	54	1.12
61943--62840	434	2.1	433	84	5	1139	31	13	12	42	1.82

Tables:   1

The End!