genome.fa.s11227.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011227.1 Corchorus capsularis cultivar CVL-1 contig11248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47816

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549--579	14	2.2	14	94	0	53	16	6	6	70	1.29
1891--2067	58	3.1	58	98	0	336	43	18	21	16	1.88
3884--3912	13	2.1	14	93	6	51	41	17	6	34	1.76
4838--4871	16	2.1	16	100	0	68	11	23	17	47	1.81
14868--14900	16	2.1	16	88	11	50	51	27	12	9	1.69
15073--15137	17	4.0	16	76	9	69	43	33	6	16	1.73
15075--15153	32	2.5	32	91	0	122	40	34	6	18	1.76
16544--16653	39	2.8	38	83	8	123	16	11	27	44	1.82
18441--18480	20	2.0	20	95	0	71	17	30	17	35	1.93
18827--18863	19	1.9	19	88	0	56	21	13	29	35	1.92
23699--24180	47	10.9	46	71	16	156	37	20	26	14	1.92
23842--24522	40	15.9	40	74	15	471	36	21	25	16	1.93
23664--24524	173	5.0	171	79	11	761	37	21	26	15	1.93
23842--24382	213	2.6	212	82	10	639	37	21	25	15	1.93
23842--24521	89	7.9	81	74	16	436	36	21	25	16	1.93
24260--24533	47	6.0	46	73	15	223	37	20	24	17	1.93
25018--25114	49	2.0	49	87	6	142	35	16	5	43	1.70
25096--25273	50	3.5	50	73	9	146	33	15	6	43	1.73
25044--25242	100	2.0	101	81	4	233	34	15	7	42	1.74
25181--25427	51	4.8	51	85	2	273	35	14	6	43	1.71
26947--26976	11	2.7	11	89	0	51	40	0	20	40	1.52
28022--28209	72	2.6	72	86	4	263	32	18	27	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32510--32619	39	2.8	38	82	8	132	17	11	28	42	1.84
36716--36900	92	2.0	92	96	0	343	38	16	17	28	1.91
41312--41361	10	5.2	10	80	9	50	84	0	16	0	0.63
43116--43437	54	5.9	54	94	1	531	28	16	22	31	1.96
43453--43877	43	10.5	42	76	12	260	28	16	26	29	1.97
43614--43706	35	2.7	35	96	0	168	25	19	25	29	1.99
43649--43874	120	1.9	121	91	0	373	27	16	26	29	1.97
43556--43858	78	3.9	77	74	13	264	28	17	25	28	1.98
44348--44437	27	3.3	27	80	9	85	18	21	2	57	1.51
44369--44437	27	2.5	28	86	9	97	17	20	1	60	1.43
44450--44591	26	5.2	25	73	17	97	20	19	3	57	1.56
44478--44591	28	4.0	29	77	13	112	21	19	3	55	1.58
44605--44687	7	11.4	7	73	7	58	19	19	2	59	1.49
44606--44687	14	5.6	14	73	5	65	19	19	2	58	1.50
44636--44707	22	3.5	22	65	27	68	18	22	1	58	1.47
44605--44719	38	3.1	36	93	3	185	20	20	2	57	1.53
44742--44857	32	3.9	27	84	12	90	23	16	10	50	1.76
44771--44862	32	2.9	32	100	0	184	21	18	11	47	1.80
44913--44978	30	2.2	30	86	0	96	22	19	3	54	1.58
44875--44963	45	2.0	45	80	8	101	23	20	4	51	1.65
44935--45014	40	2.1	38	84	9	101	21	22	3	52	1.62
46892--46940	23	2.2	23	92	3	82	44	10	14	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47217--47445	79	2.9	78	85	4	300	31	25	16	26	1.97
47381--47580	90	2.2	90	88	0	292	31	28	16	24	1.96
47605--47806	54	3.7	54	84	5	230	34	23	14	27	1.94
47628--47806	53	3.3	53	84	7	227	35	23	15	26	1.94

Tables:   1

The End!