genome.fa.s11228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011228.1 Corchorus capsularis cultivar CVL-1 contig11249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23991

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008--1042	8	4.4	8	96	0	61	11	2	11	74	1.18
1008--1058	23	2.2	24	86	10	70	13	1	7	76	1.09
1004--1048	14	3.1	14	81	12	54	13	2	11	73	1.19
1068--1236	91	1.9	88	83	4	221	34	17	10	37	1.84
2032--2443	49	8.4	49	86	0	491	30	13	33	22	1.92
2032--2443	197	2.1	195	85	2	556	30	13	33	22	1.92
6036--6091	29	1.9	29	92	0	94	41	28	14	16	1.87
6942--6999	14	4.3	13	81	12	64	39	13	6	39	1.72
6942--6992	26	2.0	25	81	14	59	37	15	5	41	1.72
6942--6999	28	2.2	26	84	12	73	39	13	6	39	1.72
9637--9742	27	3.8	29	79	15	118	18	22	0	57	1.46
9755--9896	26	5.2	25	71	18	81	21	19	4	55	1.59
9783--9843	32	1.9	31	90	3	95	19	19	3	57	1.54
9779--9910	54	2.4	57	79	5	144	22	19	3	54	1.58
9909--9991	7	11.4	7	72	12	60	18	18	2	61	1.45
9903--9936	16	2.3	15	90	10	52	20	20	0	58	1.39
9909--10039	14	9.4	14	70	17	60	17	19	2	60	1.47
9909--10030	38	3.3	37	89	4	176	18	18	2	60	1.47
10042--10129	32	3.2	26	82	14	88	25	15	9	50	1.74
10079--10150	32	2.2	32	87	7	101	23	20	9	45	1.81
10185--10290	30	3.2	30	70	23	86	22	19	2	54	1.57
10194--10326	70	1.9	70	93	0	230	22	21	3	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13600--13648	23	2.2	23	96	3	91	44	12	14	28	1.81
13816--13953	44	3.2	44	68	19	128	28	12	25	34	1.92
13726--14156	89	4.9	88	87	6	606	28	14	25	31	1.95
13725--14478	173	4.3	174	80	10	678	26	15	25	32	1.96
14098--14235	72	1.9	74	86	5	201	23	19	23	32	1.97
14170--14478	90	3.4	90	83	3	379	24	16	25	33	1.96
13936--14409	254	1.9	253	86	5	681	25	16	26	31	1.96
20084--20116	17	2.1	17	88	11	52	15	6	12	66	1.42
21206--21256	25	2.0	27	88	7	79	17	23	23	35	1.95
23257--23738	35	13.7	35	85	7	561	32	17	10	38	1.84
23257--23743	70	6.9	70	86	4	665	33	17	10	38	1.84
23257--23739	105	4.6	105	86	2	639	33	17	10	38	1.84

Tables:   1

The End!