Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001123.1 Corchorus capsularis cultivar CVL-1 contig01123, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3136
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29


Found at i:2444 original size:21 final size:19

Alignment explanation


    Indices: 2402--2446  Score: 54
    Period size: 21  Copynumber: 2.3  Consensus size: 19

       2392 CTATTGCCCC

                            *  
       2402 TTTCACCCAAAACCTTCCT
          1 TTTCACCCAAAACCTTACT

                               * 
       2421 TTTCACTCTCAAAACCTTATT
          1 TTTCAC-C-CAAAACCTTACT

                 
       2442 TTTCA
          1 TTTCA

       2447 ATCAACAAAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  19    6  0.27
  20    1  0.05
  21   15  0.68

ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40


Consensus pattern (19 bp):   
TTTCACCCAAAACCTTACT
Done.