Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011233.1 Corchorus capsularis cultivar CVL-1 contig11254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8792
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:2558 original size:21 final size:21

Alignment explanation


    Indices: 2532--2573  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2522 GCTCAAGTGA

                   *             
       2532 CCGGCCATGCGACTTGGAGAT
          1 CCGGCCACGCGACTTGGAGAT

                                 
       2553 CCGGCCACGCGACTTGGAGAT
          1 CCGGCCACGCGACTTGGAGAT

       2574 GCCCGCGCAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17


Consensus pattern (21 bp):   
CCGGCCACGCGACTTGGAGAT

Found at i:2598 original size:33 final size:33

Alignment explanation


    Indices: 2553--2652  Score: 132
    Period size: 33  Copynumber: 3.1  Consensus size: 33

       2543 ACTTGGAGAT

                         *                    
       2553 CCGGCCACGCGACTTGGAGATGCCC-GCGCAACA
          1 CCGGCCACGCGACATGGAGATGCCCGGC-CAACA

                   *                      *  
       2586 CCGGCCATGCGACATGGAGATGCCCGGCCATCA
          1 CCGGCCACGCGACATGGAGATGCCCGGCCAACA

                             **              
       2619 CCGGCCACGCGACATGGCCATGCCCGGCC-ACA
          1 CCGGCCACGCGACATGGAGATGCCCGGCCAACA

              
       2651 CC
          1 CC

       2653 CAGCCACATG


Statistics
Matches: 59,  Mismatches: 7, Indels: 3
        0.86            0.10        0.04

Matches are distributed among these distances:
  32    4  0.07
  33   53  0.90
  34    2  0.03

ACGTcount: A:0.20, C:0.42, G:0.29, T:0.09


Consensus pattern (33 bp):   
CCGGCCACGCGACATGGAGATGCCCGGCCAACA

Done.