Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011235.1 Corchorus capsularis cultivar CVL-1 contig11256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17435

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3594--3647
21
2.6
21
77
13
58
9
37
33
20
1.84
3998--4125
35
3.7
35
79
1
132
29
12
25
32
1.92
4149--4959
90
9.0
89
85
5
901
26
15
25
31
1.96
4149--4959
361
2.3
359
83
6
986
26
15
25
31
1.96
5220--5517
47
6.3
47
85
3
411
19
24
20
36
1.95
5220--5526
141
2.2
141
93
0
533
19
24
19
36
1.95
5535--5629
21
4.3
22
72
12
61
80
7
9
3
1.01
5535--5573
13
2.9
13
88
3
51
87
5
7
0
0.68
6932--7005
36
2.1
36
100
0
148
47
5
39
8
1.56
8521--8569
25
2.0
25
92
4
73
79
2
14
4
0.97
14852--14879
2
14.0
2
100
0
56
50
0
0
50
1.00
14936--14963
2
14.0
2
100
0
56
50
0
0
50
1.00
15035--15105
22
3.2
22
70
21
58
43
12
7
36
1.70
15253--15313
22
2.8
23
82
9
83
40
9
11
37
1.75
15235--15334
43
2.3
44
81
8
107
44
10
10
36
1.72
15345--15444
44
2.3
45
86
8
143
35
17
13
35
1.88
15428--15537
22
5.0
22
75
11
75
35
15
9
40
1.79
15453--15531
23
3.5
23
80
13
76
36
15
8
39
1.78
15546--15617
22
3.3
22
84
3
83
37
20
5
36
1.76
15650--15725
22
3.5
22
78
7
66
38
15
7
38
1.77
15799--15843
22
2.0
22
95
0
81
46
22
4
26
1.70
16567--16636
33
2.1
33
94
0
122
42
7
10
40
1.66

Tables:   1

The End!