Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011237.1 Corchorus capsularis cultivar CVL-1 contig11258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78388

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3999--4048
16
3.1
16
85
0
73
62
4
4
30
1.32
5137--5162
2
13.0
2
100
0
52
50
0
0
50
1.00
6638--6667
15
2.0
15
93
0
51
36
30
0
33
1.58
7835--8089
141
1.8
142
84
5
356
40
20
17
21
1.91
8126--8166
20
2.0
20
85
0
55
70
7
9
12
1.33
10539--10563
12
2.1
12
100
0
50
68
8
16
8
1.38
11155--11360
101
2.0
102
95
0
369
36
21
7
33
1.83
21363--21388
2
13.0
2
100
0
52
50
0
0
50
1.00
25345--25381
16
2.3
16
90
0
56
43
8
16
32
1.77
30863--30915
21
2.6
21
87
3
72
7
32
32
28
1.85
35552--35585
7
4.7
7
88
3
50
14
2
11
70
1.27
35874--35915
17
2.3
18
92
8
68
47
21
11
19
1.81
35873--35947
27
2.8
27
83
0
96
44
24
13
18
1.85
36332--36959
70
8.9
70
86
2
882
35
21
20
21
1.96
36338--37274
141
6.5
141
79
11
1059
36
21
20
21
1.96
37018--37133
49
2.4
49
89
2
171
35
23
18
23
1.96
36964--37375
190
2.2
191
82
5
469
36
22
20
20
1.95
37081--37274
71
2.8
70
90
2
300
34
21
22
22
1.97
37222--37323
49
2.1
49
98
0
195
34
24
20
20
1.97
37152--37485
120
2.8
120
96
0
598
37
22
19
20
1.95
37342--37443
49
2.1
49
92
0
168
37
24
17
20
1.94
36771--37485
310
2.3
309
87
3
999
36
22
20
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38602--38645
17
2.8
16
83
10
54
0
20
2
77
0.88
38602--38646
15
2.9
15
81
12
54
0
20
2
77
0.87
38615--38649
17
2.1
17
94
0
61
0
20
2
77
0.90
38728--38768
22
1.9
21
85
5
55
34
9
2
53
1.47
39372--39410
15
2.7
15
88
7
55
43
5
7
43
1.55
39476--39532
26
2.2
26
83
3
69
3
17
0
78
0.88
45265--45340
27
2.8
27
89
2
116
44
25
10
19
1.82
46235--46282
20
2.3
20
82
3
60
16
8
8
66
1.42
52734--52786
21
2.6
21
87
3
72
7
32
32
28
1.85
57861--57904
21
2.2
20
83
4
52
63
11
4
20
1.44
59213--59252
19
2.2
18
86
4
53
30
20
5
45
1.72
59850--59887
19
2.0
19
100
0
76
10
15
21
52
1.72
60959--61020
26
2.3
28
83
5
74
20
24
17
37
1.94
69846--69876
2
15.5
2
100
0
62
51
0
0
48
1.00
72729--72808
36
2.2
36
95
2
144
15
18
11
55
1.69
76125--76185
29
2.1
28
82
8
70
62
6
8
22
1.47
76233--76355
52
2.4
52
87
2
185
33
17
14
34
1.90

Tables:   1

The End!