Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011238.1 Corchorus capsularis cultivar CVL-1 contig11259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20154

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6024--6066
19
2.3
19
80
8
52
51
4
11
32
1.59
7209--7451
35
6.9
35
82
5
287
14
19
24
41
1.89
7499--7569
34
2.1
34
89
0
106
14
18
26
40
1.88
7570--8243
338
2.0
338
90
2
1070
30
19
16
34
1.94
7567--8245
170
4.0
170
90
2
1012
30
20
15
34
1.94
8297--8607
38
8.4
38
75
6
269
26
11
13
48
1.77
8364--8595
76
3.1
76
89
0
338
26
11
14
46
1.79
8908--9576
63
11.0
63
81
9
516
22
20
16
40
1.91
9037--9555
58
8.7
58
84
6
428
21
20
17
40
1.91
16260--16284
13
1.9
13
100
0
50
64
0
32
4
1.12
17206--17282
40
1.9
41
94
2
138
49
11
12
25
1.75
18003--18040
16
2.4
16
90
0
58
34
2
13
50
1.55
18449--18483
18
1.9
18
94
0
61
25
14
0
60
1.35
18553--18592
17
2.4
17
91
0
62
30
10
5
55
1.54
19217--19255
20
2.0
20
85
10
53
12
0
10
76
1.01

Tables:   1

The End!