Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011240.1 Corchorus capsularis cultivar CVL-1 contig11261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38052

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
321--351
2
15.5
2
100
0
62
48
0
0
51
1.00
3820--3852
14
2.3
15
90
10
52
87
3
9
0
0.63
4805--4888
35
2.4
35
96
2
152
30
16
19
33
1.94
4819--5032
89
2.4
88
83
5
263
28
16
21
34
1.95
4942--5086
54
2.7
55
80
4
179
26
18
21
33
1.96
5050--5365
35
9.1
34
84
3
319
29
17
18
34
1.94
6737--6776
17
2.4
17
95
0
71
32
10
2
55
1.47
6871--6936
24
2.9
22
76
19
64
22
10
1
65
1.32
8347--8745
22
18.5
22
69
11
184
36
9
16
37
1.81
9461--9504
19
2.3
19
88
0
61
31
22
4
40
1.74
11182--11552
156
2.4
156
80
4
381
30
15
19
34
1.93
17780--17819
21
1.9
21
84
0
53
62
10
2
25
1.39
20468--20504
19
2.0
18
89
5
56
29
21
8
40
1.82
20798--20827
16
1.9
16
93
6
53
46
13
3
36
1.60
20939--20968
15
2.0
15
93
0
51
43
16
13
26
1.85
26650--26691
21
2.0
21
95
0
75
19
30
33
16
1.94
26671--26777
33
3.2
33
90
2
162
19
42
28
9
1.82
26671--26810
66
2.1
66
84
5
176
20
42
27
10
1.83
27732--27765
8
4.1
8
85
7
50
61
8
2
26
1.40
27839--27877
5
7.6
5
94
5
69
79
0
0
20
0.73
33241--33348
33
3.3
33
83
5
121
21
41
28
8
1.82
33323--33385
33
1.9
33
86
0
90
23
44
23
7
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34405--34580
64
2.8
64
83
0
217
25
32
19
22
1.97

Tables:   1

The End!