Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011246.1 Corchorus capsularis cultivar CVL-1 contig11267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10868
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:832 original size:32 final size:32

Alignment explanation


    Indices: 786--850  Score: 94
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        776 TTGAAATTTA

                *    *                      
        786 AAGGGGCAAGCTGGCATAATTTTACAAAATTC
          1 AAGGAGCAAACTGGCATAATTTTACAAAATTC

                           *       *        
        818 AAGGAGCAAACTGGCCTAATTTTGCAAAATTC
          1 AAGGAGCAAACTGGCATAATTTTACAAAATTC

             
        850 A
          1 A

        851 TGAGGCAATG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25


Consensus pattern (32 bp):   
AAGGAGCAAACTGGCATAATTTTACAAAATTC
Done.